Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03840 ATGGCGGGGTTGTTCTCATTAGGCGGAGGTCGAGGGAGTAGCAACAACCAGCAAGACAACACTACAACCAACAACGAGATTCCTGCAGCGGAGACCCTATACTGGTACAGCAAAAACGACGACGTTTCGTCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGCCCCCTCCAGCAGCGAGATCTTTACTCCTCCGGTGTGGGGCCCAGCCGAGGCGTCTCGGATGATCACTCGTCGTCAAGATCGGCGTTTGTGGCGATGCGTGCGGCAGAGGGCGGAATAAGCTGCCAGGACTGCGGAAACCAAGCCAAAAAAGATTGCCCTCACATGCGGTGCAGAACGTGCTGCAAGAGCAGAGGCTACGAGTGCCAAACCCATGTCAAAAGTACTTGGGTTCCCGCTTCCAAACGCCGCGAGCGTCAGCAACAGCTAGCGGCGTTGCAAGAGCAACAACAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGAGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGAAGGGTTAGAAGAAGGGCATTTTCCTTCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAAGTATGCGTATCAAACGGCTGTGAACATTGGGGGACATGTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAACAACAGTAATAATAGTAATAATTACATGGCTGGGGAGACCTCTGGTGTTGTTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCTCTTCTTCTGGGGCACTTGTTGATCCTTCCTCCATGTATTCAGCTCCAGTCAACACTTTCATGGGTGGCAGCGGTACGCAATTCTTCCCTCACACAAGATCTTGA 930 0.5312 MAGLFSLGGGRGSSNNQQDNTTTNNEIPAAETLYWYSKNDDVSSYRGFELWNQQQEQHVMPPHARPLQQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDKYAYQTAVNIGGHVFKGILYDYGPENSNNNNSNNSNNYMAGETSGVVGAQPLNLTASGVVSSSGALVDPSSMYSAPVNTFMGGSGTQFFPHTRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03840 309 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g03840 309 NCBIfam LRP1 C-terminal domain 191 239 IPR006511 -
Spst3g03840 309 Pfam Domain of unknown function (DUF702) 103 240 - -
Spst3g03840 309 Coils Coil 147 167 - -
Spst3g03840 309 MobiDBLite consensus disorder prediction 144 192 - -
Spst3g03840 309 MobiDBLite consensus disorder prediction 9 26 - -
Spst3g03840 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
Spst3g03840 309 NCBIfam putative zinc finger domain, LRP1 type 105 147 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03840 Spst-Chr3 88467577 88469137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03840 1 309 C2H2 Transcription Factor Family AT3G51060 44.624 1.64e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst3g03840 DUF702 1.6e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03840 - - gmx:100789129 421.009