Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03830 ATGGCTCTCAAACTCAGCCCCCAAAGGTTCTCAGAGGACCTTAGCATGCAAAAGGTGGCCTCTTGCGATGACCTCTTCGTCGACGACCTCTTCGACTTTTCACTCCTCGAAAACGAAGAATCCGACCAAGACATACATAAGCACCACTCAAATTCTGCTTCCCCTCACAACAACAACAACAACTACAATATTTACAATTATAACCTCTCCTTCAACGACAATTTCAATACCGAACTCACACTTCCGTCGCAATTTTTACAGGCGGAGGAGGTTGCGGACTTGGAATGGGTGTCTCATTTCATTGAAGATTCTTTTTCCAAATACTCCCTTTCCTTCCCCGCAACCGTCACACAGAGCCTCCCCGAGAAACCACCGGAACTGGGAGACGCCGGTTTCACTTTTAAGACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGTGTTCGAGTTTGGCCACTCAGGTCGCCCTCGTTTTTCACCGACACGTCATCAATCTCCAGTCCTTTGCTAATTTGCGCCGCGGCGTCTAAAAACCGCCACCCGGAAGATAAAAGGGCAAGGAAACGGGCTGCGCCGGACGGTGGAGCTGCGCGACGTTGCGGCCATTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACCGGACCGCTGGGGCCTAAGACCTTGTGCAACGCGTGCGGAGTTCGGTATAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGCCCTACTTTTTCGAGCGAGTTGCATTCCAACCACCACCGGAAGGTTCTGGAAATGCGGCAGAAGAAGGAGGCGGGCCCTGAACCGGACACCGGTTCGCCACCGGTTACCGAAAATCTACCTAAGAGCAAGGTATTTGAATTTTGCAGCTTTGTTTGCCATGTCGGGGGTTTAGAGCAAAGGAGAATGGAAAATTTGACTCTCTAA 942 0.5202 MALKLSPQRFSEDLSMQKVASCDDLFVDDLFDFSLLENEESDQDIHKHHSNSASPHNNNNNYNIYNYNLSFNDNFNTELTLPSQFLQAEEVADLEWVSHFIEDSFSKYSLSFPATVTQSLPEKPPELGDAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSFFTDTSSISSPLLICAAASKNRHPEDKRARKRAAPDGGAARRCGHCGVQKTPQWRTGPLGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAGPEPDTGSPPVTENLPKSKVFEFCSFVCHVGGLEQRRMENLTL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03830 313 CDD ZnF_GATA 202 250 IPR000679 GO:0006355|GO:0043565
Spst3g03830 313 ProSiteProfiles GATA-type zinc finger domain profile. 197 233 IPR000679 GO:0006355|GO:0043565
Spst3g03830 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 259 - -
Spst3g03830 313 ProSitePatterns GATA-type zinc finger domain. 203 228 IPR000679 GO:0006355|GO:0043565
Spst3g03830 313 PIRSF Txn_fac_GATA_plant 5 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst3g03830 313 Gene3D - 199 272 IPR013088 GO:0006355|GO:0008270
Spst3g03830 313 MobiDBLite consensus disorder prediction 179 202 - -
Spst3g03830 313 PANTHER GATA TRANSCRIPTION FACTOR 12 278 - -
Spst3g03830 313 SMART GATA_3 197 251 IPR000679 GO:0006355|GO:0043565
Spst3g03830 313 Pfam GATA zinc finger 203 237 IPR000679 GO:0006355|GO:0043565
Spst3g03830 313 FunFam GATA transcription factor 193 276 - -
Spst3g03830 313 MobiDBLite consensus disorder prediction 180 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03830 Spst-Chr3 88300396 88302092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03830 1 277 C2C2-Gata Transcription Factor Family AT5G66320 44.062 8.80e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst3g03830 GATA 7.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03830 - - pvu:PHAVU_003G258900g 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03830 3 88300396 88302092 Spst3g03830 3 88300396 88302092 ECH
Spst3g03830 3 88300396 88302092 Spst3g03830 3 88300396 88302092 PCT