Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03827 ATGGACATCAAGCGAGTGGCTGCAAGAGTCCGAGCGAGATCGTGCGGTGTTCGCCAAGCTGTCGTTTTGAGGGCTACCAAGACACTCTATACGTCCAAGCCCACGAGACAATTCTACAGGAGCTGCATCGTTAGTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCAGAACTGCATCATGGTTGTGAGGAAGCCAAATGACAACCAGCGAGAACATGGACAAGATCGGGAGCTACCTTGGAAGGCCATGGAAGGAGTTCTCAAGAACCATTGTGATGGAATCGAAATAGGTGACTTCATTCACCCCGATGGATGGACAGCTTGGAATGGAGACTTTGCTCTCAAAACATTGTACTATGCTGAGTATGGCAACACAGGACCTGGTGCCACCACCAATATGCGACAAGGTGTTCGCCATGGAGAGCTTGTTCTCAGGGAAACAAATAATGAGAGATTGAGGAAAAGTTTGGAAAGTAAAGTTCACAAGAAAGATCACTCCAGTCAGACCAGAAAAGTTAATTTTGTAATATATGTTGTTAATGCTCTTCTGATTGTGAATGTAATGAACGATTCTAGTGATTCAGAGACAGATTATATTGAAACAATTGTTTCTACTTTCAATTACCCATCCCTATCATTTAAAGATGACAAACCGGTACTTGTTTTCACTCATGGGGATCTCCTTTCACGCACTGAGCGTGCTCATGTTCGTGGACGTCTGGGAAAGTTATTAGGAATTCCACCCACCAAGCAAATTTTTGACATCCCGAATTCTGATTGTCCAGCAACTGAGTCTGCCATAATTGGAATGCTACGATATAGTCTTGCCTATGCAGACATAAATCTTCCTCAGAAATGCAAGGTCCTTGGGTATAAGGTTCATAAATTTTTTTTCACCAGTATACATGATTTTCCTGATTCTGGGGATAGGAGTTGCAATTGGTATGGGACAAAGAGCAGAAGTACACGTTCCATTTTCAAAAACAAAATTTCTCAATAA 1011 0.4273 MDIKRVAARVRARSCGVRQAVVLRATKTLYTSKPTRQFYRSCIVSGTIDFIFGDAAVVFQNCIMVVRKPNDNQREHGQDRELPWKAMEGVLKNHCDGIEIGDFIHPDGWTAWNGDFALKTLYYAEYGNTGPGATTNMRQGVRHGELVLRETNNERLRKSLESKVHKKDHSSQTRKVNFVIYVVNALLIVNVMNDSSDSETDYIETIVSTFNYPSLSFKDDKPVLVFTHGDLLSRTERAHVRGRLGKLLGIPPTKQIFDIPNSDCPATESAIIGMLRYSLAYADINLPQKCKVLGYKVHKFFFTSIHDFPDSGDRSCNWYGTKSRSTRSIFKNKISQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03827 336 Gene3D - 4 79 IPR012334 -
Spst3g03827 336 Pfam Pectinesterase 6 75 IPR000070 GO:0030599|GO:0042545
Spst3g03827 336 Pfam Pectinesterase 98 138 IPR000070 GO:0030599|GO:0042545
Spst3g03827 336 SUPERFAMILY Pectin lyase-like 6 138 IPR011050 -
Spst3g03827 336 Gene3D - 80 180 IPR012334 -
Spst3g03827 336 PANTHER PECTINESTERASE 6 83 - -
Spst3g03827 336 ProSitePatterns Pectinesterase signature 2. 44 53 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03827 Spst-Chr3 88273175 88275979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03827 28 138 Carbohydrate Esterase AT1G02810 42.568 4.99e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03827 - - gmx:100783278 221.476