Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03819 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCCGCAGCTATTGTTTTCTGCGCCGCCGATGAGGCCGCGCTGTGCCGTGCCTGTGATGAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATATAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCGCGCTGTGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATTGTTCATGTAGGAGGTAAAAGAACACACGAAAGATATCTTCTTTTTAGGCAAAGAGTTGAGTTTCCAGGAGATAAACCTGGTAAGTCAGACAACCCAGCTTCACAACCTCTGGATCCAGGTGAAACTAAAAGAGGACAAAATGCACTGTCCAAAATAAAAATGGTAGAAAAACAGCAAAATCACAGGATGCCTCTGATTCTGACGGCAGAACCTAATGTTGATGAGCATGCCATGATGGGAACTAAAATGATTGATTTGAATATGAAGCCTCAGAGAATACACGAACCAACATCAAATAATCAGTCACCTGGTGACTATGAAAGTAAATTGCAACAGGATCATACACCAGAAATCTTTAAAGAGGAAAGGCTTTATATATTTCTCATGCATTCTAGATACAAGGTTGCCATACTACTGTGTTCACAATCCTATTCTCTCAAATGTGTTGGATCATCAAGTCATTTGAGGAGTATAGTGGAGACCTATTTCCTATTTTAA 744 0.418 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSDNPASQPLDPGETKRGQNALSKIKMVEKQQNHRMPLILTAEPNVDEHAMMGTKMIDLNMKPQRIHEPTSNNQSPGDYESKLQQDHTPEIFKEERLYIFLMHSRYKVAILLCSQSYSLKCVGSSSHLRSIVETYFLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03819 247 SUPERFAMILY B-box zinc-binding domain 48 87 - -
Spst3g03819 247 FunFam B-box zinc finger protein 19 2 92 - -
Spst3g03819 247 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst3g03819 247 CDD Bbox1_BBX-like 56 96 - -
Spst3g03819 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 176 - -
Spst3g03819 247 SMART bboxneu5 51 96 IPR000315 GO:0008270
Spst3g03819 247 SMART bboxneu5 1 47 IPR000315 GO:0008270
Spst3g03819 247 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Spst3g03819 247 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Spst3g03819 247 CDD Bbox1_BBX-like 4 47 - -
Spst3g03819 247 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Spst3g03819 247 MobiDBLite consensus disorder prediction 105 127 - -
Spst3g03819 247 Gene3D Classic Zinc Finger 2 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03819 Spst-Chr3 88160147 88162744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03819 1 198 C2C2-CO-like Transcription Factor Family AT4G38960 57.071 1.55e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst3g03819 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03819 - - vun:114176173 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03819 3 88160147 88162744 Spst3g03819 3 88160147 88162744 ECH
Spst9g00112 9 860343 861422 Spst3g03819 3 88160147 88162744 ECH
Spst2g02572 2 25437653 25438682 Spst3g03819 3 88160147 88162744 ECH
Spst3g03819 3 88160147 88162744 Spst3g03819 3 88160147 88162744 PCT