Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03812 ATGGAAAAGCACGAGAAAAAACATTCACAAGACATAAAATCAAGGGTGGAAGGTATTAATGGTGGTGGTGGTGGTGAATTTGATGCAGTTCCAGTGATTGATATGATGGAGTCATGTGTCCCACCGGGCTTTCGGTTCCACCCAACAGATGAAGAACTTGTGGGTTATTACCTCAGGAAGAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAATAGACCTATATCGTATTGAACCATGGGATCTCCAAGTTCTTTTTGTGAGTCGAAGTAGGGTTTTGGGTGTCATTGATAAAGCTTTTGTTGAAGAAGTCTTGTCTGGCTAG 333 0.4114 MEKHEKKHSQDIKSRVEGINGGGGGEFDAVPVIDMMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQVLFVSRSRVLGVIDKAFVEEVLSG 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03812 110 ProSiteProfiles NAC domain profile. 40 110 IPR003441 GO:0003677|GO:0006355
Spst3g03812 110 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g03812 110 Pfam No apical meristem (NAM) protein 41 86 IPR003441 GO:0003677|GO:0006355
Spst3g03812 110 Gene3D NAC domain 49 102 IPR036093 GO:0003677|GO:0006355
Spst3g03812 110 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 37 86 - -
Spst3g03812 110 SUPERFAMILY NAC domain 35 88 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03812 Spst-Chr3 88082607 88086518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03812 33 86 NAC Transcription Factor Family AT2G18060 87.273 2.25e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g03812 NAM 7.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03812 - - pda:103699674 115.546