Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03811 ATGGTTGTGAATGATTTGAGTTTGGCAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAGTATCCAACTGGGACAAGAACCAACAGAGCTACCATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAACCTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTCGAAACCGTCGAGAATGGACCTCCACAGGCAAAGAAAGTGAAACAAGTCCATAAAAGTCTCATCTTAGCTTTCCAACATATAATCGAGTGTGTGCAGGAAGAAGGGTGGGTTGTGTGTAGAGCATTCAAGAAAAGAACCAACTGCCAAATGAAGACTATTGAAGGATGGGATCGAAGCTACATATACGACGAACAAGCAAGTGGTGTCAACTATTCGGTGGACCCTATTGACCGTATGTTAAGGCAACCTCAGGGGAATAATATTTCAGCTCAAAATTTCTTGTACAAGCAAGAGATAGAAGCAGATAATTTGAGTTTCATGCATGCAGAACAACTGGTGCACGTGCAGCTTCCTCAGCTAGAAAGTCCTTCCATGCCATTAGTAAAGAAGCAAACCTCAGTGTCCCTAATATCAGACAATATAAACAACGAAGATGATTATCAAAAGGGATTATCCAACACAAAGAAAGTGACTGACTGGAGAGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAACAGAAGCGGTGACAAGCTTTGCAACTCACACCAGCTCAGAAATGGCATTTCTGCTACATCAGAATACTAGGGAAAATGAAAAGAACAAGTTCAACCCGTTTTTAAATACAAGTTCATCAGACTGTGACATTGGGATATGCGTATTTGAAAAATGA 963 0.4216 MVVNDLSLAERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTNLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQAKKVKQVHKSLILAFQHIIECVQEEGWVVCRAFKKRTNCQMKTIEGWDRSYIYDEQASGVNYSVDPIDRMLRQPQGNNISAQNFLYKQEIEADNLSFMHAEQLVHVQLPQLESPSMPLVKKQTSVSLISDNINNEDDYQKGLSNTKKVTDWRALDKFVASQLSQEERHETEAVTSFATHTSSEMAFLLHQNTRENEKNKFNPFLNTSSSDCDIGICVFEK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03811 320 Gene3D NAC domain 5 140 IPR036093 GO:0003677|GO:0006355
Spst3g03811 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 260 - -
Spst3g03811 320 ProSiteProfiles NAC domain profile. 1 135 IPR003441 GO:0003677|GO:0006355
Spst3g03811 320 SUPERFAMILY NAC domain 16 135 IPR036093 GO:0003677|GO:0006355
Spst3g03811 320 Pfam No apical meristem (NAM) protein 17 91 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03811 Spst-Chr3 88080333 88082573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03811 8 319 NAC Transcription Factor Family AT2G18060 50.877 1.41e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g03811 NAM 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03811 - - aprc:113869508 423.32