Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03810 ATGAGAACACGAAATGCTGATTCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCACCGGCTAGGAAATCCCCTGCGGCGAAGCGCACCGTCGCCACCAAGACCAGAAGCGCCAAGAAGAAGGAGGTCTCGGCCGCAACCAATTCTAGTCCTGATCAATCTCCTCTAGAGCAGAAACAGTTAGGTAGTGGTAGCAGTACAAAAATTGCGAAAAAGAAGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATAGTCCGAATTTGGAAGAACAATGTGAGGCAGTGGCTGATGAAACTCCAGTTCAAGATAAAACCGAGTCTGCTGATAAAGTGGAAGATGTTGAAGTTGTAGATGCTGTTAATATTGAGGGTGAGAAAGAGGGGGAACAAGGTGTTGGGTTTTCTGACGAGAAGGACTTGAAGTCGATGGAAGTGGACGAACCTGTTGTTGAAAAGGGAAATGACATAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACCAGGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGGGAAAGGAAAGGAGAAGTTGAAAGAACAGGAAGGAGATGAAGGGAAGGAAGAGGTGAAAGTGCATGTAGGAGACAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGACAAAGGAATTGGAGAGTTGAAAGAACTGGATGGGGAGGAAGGAATGGGAGAGTTGAACGAACTGGATGTGGAGGAAGGTAAGGAAGAGTTGAAAGAACTTGATGGAGAGAAAGGTAAGGAAGAGTTAAAAGGAATAGAAGGCGAGGAATGTAAGGAAGTATTGATAGAACGGGAAGGAGAGAAAGGTAAAGAAGAGTTGATAGAACAAGAAGGACATAAAGGAAATGTTAAATTGAAAGAACAGGAAGCAAACAAAGGAAAGTTGAAAGCGTGGGATCCAGAGAAAGCAAAGGGAGAGGAAACAAACCATTTTGGAAATGAAGAGAACACTGAGTCTCTTGGTGTAGAAGTGAAAGCCCAGATGCAAACAGAAGATGCGAATGCCATTAAAGATGGTGGTGAAGGACCAAAGAGTGGTGAAAATTTAGATATTCGAGAACAAGGGAAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAACATCCAGAAGAAACTGACGCATTGGAGGAGGAGCATAGGGAATTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTTAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAAGGCTATGCTTTTGTGAAGTTTGCAAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACAATATTCTTGGGAAATATTTGCAATACTTGGACGAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGTATTGATGGGGTTGAAAACATTACACTTGTCCCAGACGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTCCTAGAATTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGCGAACCTGACCCAGAAGTAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTGTTTAAGTCTTATGGTGAAATTATAAGAATTGTGTTAGCAAGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGGCTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATAGGTCATGCCAGGAGTGCAGCCTTTTCAAGACCAGTCCCTACTACAGGGAGGGGGTTTGGAAGAGGAAGACAACCCTTCAACAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTATCACGGTGGACACAATCAAATTGGAAGAATGGGTTTTCGGGATGACCTTGATTTTAATATGCATCCGGATTTCCGTCAAAGGCAATTTGGTCCACAAGGTGCCGTGAGAGGTGGACATTATGCTGGTAACCGAGGTGCTTCATTTGCTGGACCATCTAGACCTTATCATGATAGAGCATGGTATGGGATGCCTGATGCAGGTCCTAATGAGCCAATTCCGCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGACATGTTGATGATCCATATCTATGCGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGATCCTGAACCTGATTACATGGGGCCTACTAGACTTCGTCCTCGATTGGATTATGCAGATGCGCCCATCTTTAACGGAGCTCGTCACCATGATTATTTTGGGGCTGGCAGCAGTCATTACCCGCCTGACTATTATGGTTCCGATTACGATAGAGGTACATACTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAA 2772 0.4398 MRTRNADSASKSATPKKTPPARKSPAAKRTVATKTRSAKKKEVSAATNSSPDQSPLEQKQLGSGSSTKIAKKKAPGRPRVKAIDSPNLEEQCEAVADETPVQDKTESADKVEDVEVVDAVNIEGEKEGEQGVGFSDEKDLKSMEVDEPVVEKGNDIMEVEVTASQDVSVSFQRPGRPIMDLNISADNEDCTGEKEGGKGKEKLKEQEGDEGKEEVKVHVGDKGKEELKELEGDKGIGELKELDGEEGMGELNELDVEEGKEELKELDGEKGKEELKGIEGEECKEVLIEREGEKGKEELIEQEGHKGNVKLKEQEANKGKLKAWDPEKAKGEETNHFGNEENTESLGVEVKAQMQTEDANAIKDGGEGPKSGENLDIREQGKVELAEEDPEEDPEEHPEETDALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTIFLGNICNTWTKEAIKQKLKDYGIDGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEVMAQVKSVFINGLPPHWDEDHVRELFKSYGEIIRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSEMGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPVPTTGRGFGRGRQPFNNRGNFNRDRSFYHGGHNQIGRMGFRDDLDFNMHPDFRQRQFGPQGAVRGGHYAGNRGASFAGPSRPYHDRAWYGMPDAGPNEPIPPRRPYSPGGQFDMPFMGRHVDDPYLCDDNMHGMKRPFYMTDPEPDYMGPTRLRPRLDYADAPIFNGARHHDYFGAGSSHYPPDYYGSDYDRGTYSSYYGGDGSHGHGYYY 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03810 923 MobiDBLite consensus disorder prediction 97 145 - -
Spst3g03810 923 Gene3D - 591 749 IPR012677 -
Spst3g03810 923 Gene3D - 371 498 IPR012677 -
Spst3g03810 923 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 589 IPR000504 GO:0003723
Spst3g03810 923 MobiDBLite consensus disorder prediction 386 401 - -
Spst3g03810 923 Coils Coil 256 276 - -
Spst3g03810 923 Gene3D - 503 588 IPR012677 -
Spst3g03810 923 CDD RRM_SF 426 495 - -
Spst3g03810 923 MobiDBLite consensus disorder prediction 710 735 - -
Spst3g03810 923 SUPERFAMILY RNA-binding domain, RBD 594 694 IPR035979 GO:0003676
Spst3g03810 923 MobiDBLite consensus disorder prediction 167 277 - -
Spst3g03810 923 MobiDBLite consensus disorder prediction 42 67 - -
Spst3g03810 923 FunFam Heterogeneous nuclear ribonucleoprotein Q 589 744 - -
Spst3g03810 923 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 424 502 IPR000504 GO:0003723
Spst3g03810 923 FunFam Heterogeneous nuclear ribonucleoprotein Q 504 588 - -
Spst3g03810 923 SMART rrm1_1 603 678 IPR000504 GO:0003723
Spst3g03810 923 SMART rrm1_1 505 582 IPR000504 GO:0003723
Spst3g03810 923 SMART rrm1_1 425 498 IPR000504 GO:0003723
Spst3g03810 923 MobiDBLite consensus disorder prediction 295 339 - -
Spst3g03810 923 MobiDBLite consensus disorder prediction 1 145 - -
Spst3g03810 923 MobiDBLite consensus disorder prediction 295 407 - -
Spst3g03810 923 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 602 682 IPR000504 GO:0003723
Spst3g03810 923 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 574 IPR000504 GO:0003723
Spst3g03810 923 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 426 494 IPR000504 GO:0003723
Spst3g03810 923 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 604 669 IPR000504 GO:0003723
Spst3g03810 923 FunFam Heterogeneous nuclear ribonucleoprotein Q 375 498 - -
Spst3g03810 923 MobiDBLite consensus disorder prediction 369 385 - -
Spst3g03810 923 CDD RRM_SF 604 678 - -
Spst3g03810 923 CDD RRM_SF 506 569 - -
Spst3g03810 923 MobiDBLite consensus disorder prediction 187 277 - -
Spst3g03810 923 SUPERFAMILY RNA-binding domain, RBD 425 569 IPR035979 GO:0003676
Spst3g03810 923 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 41 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03810 Spst-Chr3 88067733 88072216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03810 426 670 Eukaryotic Initiation Factors Gene Family AT2G23350 23.810 1.73e-16 82.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03810 3 88067733 88072216 Spst3g03810 3 88067733 88072216 ECH