Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03809 ATGAGTTTTCAAAGCAATGTCATCGTTCTCATGGCAGAAGTTGTGGTTGTTCATGGGAATTTGGAGGGGGATCTTCAGTCTGGGGCCATTGCTGGGTACTCGCTCTTGTGGCTGCTCATGTGGGCCACGACTATGAAAATAGAAAAAGCTAAAAAGCACATCCGTAGTAGCATACTAGGCACCGCTGTTTTGTTTGAAATCGAAGTGGGAATACACTGGGCCGAACCAACCCAACCCACGCAACCAACACACACTCTATCGAATGGTCAGTGTTGCATCTATGCGCTGTCACTACCCACGCACACCACCATCACCCTCTCCCTAGATTTTCCTAATCTCACGCCTGTTCACCCTCATCCTCACCGTCAAACTTTATATAAGCGAGGGAGGAAATCCAACCGGGTTTCGTGGGCTACTGGAGGGAACCTGTGTCAGATAAAATTGTTCTTGTCTGAGGATTGCCCCTCAAAAGTTGGCCAACATTCGCACGATCATCTTCAAGCAAAGACATCATCAATGTTAAATTCTAGTATTAATGATCCTATCGATTTGCCCCCCGGGTTTGAAGGCAGTCATTTCCTAAAACAAACCAAGGTTGATGTCTGCTACATTTCCCACATAAAATGGGAATGCCCTCCGCTGTTTGTTGTCAGTCCTAAATGGCATGTTGCAGCGGGTGAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAAAGAGGGTGCTTGAAGCTATTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCATTGGATGTAGAAGAGGAATATTATAATGATGACATTACTCCCGTCATCCCCATCATTCCCATTGAAGAGGAAGAACCTATGGATGTTTTACCTGAAATGGCAGTAGCAGGGAACCTTTCCCCCAATGTGCAGCCGAATAACCCTATGCAATATATTTCTGCCAAAACTTGCGTACCCTCTAATGCCTCTCATACTGATTCCTCGGATCCCTGTGTAGGGTCCTTGGCTGGAGTATCTTTTGGTATGGAAGCTGATTTGGCAGCTTCGGTTGTTTCAACCATCATGAGGAGTAATGAGCAAGGATGCCTGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCAAAAATACTCGACAAGCTGATTAATGAACATAGAACTGCAGCTACCACTGTAAGTGCATCCACAAATACTGTGGATACCACTTCTGGTGATAAGCCTGCTTTTCCAGTTCTGTTGTCTACATCTACTTCTGATGTGACAGCTTCTGGGACTACACCCACAAGTGCAGTGAGTTCATTGTCTTCTGGGTTTAAGCCTGCAAATCCCTCTGTTTCAATATTGAATCCTACACCTGACAAGCCAGCCACTCTGTCAGCGCCTGCAATTCCATCAGTTTCACTGTTGTCTTCTGCTCATGATAATCCAGTTACTGCATCAGTTCCATCGTCTATTCCTGTATCCGGTAAGCCAGTAGTACCCTCAGTTTCATTGCATACACATACACCTGTATCTCATATGCCCAGGTCTGTCGGCCAAAATTTACTCCATTTGTCAAGTGGGATTTCCCCTGCTTTAAATACCGAGTCTCAGCAAGATACAGCTCCTCCATCTGGGCCAACGGGAGCGGCAGTGGCGTCCATATGTTCTGGTGAATTAAGCACTGGTCCATTGCCATCTCTTGCGAGGAACTTGCGTGCTGTTGTGAATCAAGTGCAGTCCACTCCTAGTACATTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAATCTCATCAGGCAACATGGTGCAGATAAGCACGATATGCAGGACTCACACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAACTTTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAAGGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCATGATGTTTCAGCTCAGTGGGGAGCTGGTAACGTCTTAGGGGCACAGAGTGCAAAAAGATTGAAATCGGGACCATAG 2073 0.4506 MSFQSNVIVLMAEVVVVHGNLEGDLQSGAIAGYSLLWLLMWATTMKIEKAKKHIRSSILGTAVLFEIEVGIHWAEPTQPTQPTHTLSNGQCCIYALSLPTHTTITLSLDFPNLTPVHPHPHRQTLYKRGRKSNRVSWATGGNLCQIKLFLSEDCPSKVGQHSHDHLQAKTSSMLNSSINDPIDLPPGFEGSHFLKQTKVDVCYISHIKWECPPLFVVSPKWHVAAGEESREKENQKLREKRVLEAIYPRLSAIPPSPSVSLDVEEEYYNDDITPVIPIIPIEEEEPMDVLPEMAVAGNLSPNVQPNNPMQYISAKTCVPSNASHTDSSDPCVGSLAGVSFGMEADLAASVVSTIMRSNEQGCLIDMDLLVKIFNDPKILDKLINEHRTAATTVSASTNTVDTTSGDKPAFPVLLSTSTSDVTASGTTPTSAVSSLSSGFKPANPSVSILNPTPDKPATLSAPAIPSVSLLSSAHDNPVTASVPSSIPVSGKPVVPSVSLHTHTPVSHMPRSVGQNLLHLSSGISPALNTESQQDTAPPSGPTGAAVASICSGELSTGPLPSLARNLRAVVNQVQSTPSTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKHDMQDSHIGIRHSNFQDMKPVHNFKQGEVKHKIQKPCIYFKSSKGCRNGSNCPYQHDVSAQWGAGNVLGAQSAKRLKSGP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03809 690 ProSiteProfiles Zinc finger C3H1-type profile. 642 669 IPR000571 GO:0046872
Spst3g03809 690 MobiDBLite consensus disorder prediction 526 545 - -
Spst3g03809 690 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 120 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03809 Spst-Chr3 88050361 88064486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03809 19 83 Inorganic Solute Cotransporters AT2G23150 52.308 7.77e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g03809 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03809 - - gmx:102661587 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03809 3 88050361 88064486 Spst3g03809 3 88050361 88064486 ECH
Spst3g03809 3 88050361 88064486 Spst3g03809 3 88050361 88064486 PCT