Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03792 ATGGACCAAGCTCATCAGTTCTCCCGATTAGGGTTTTTAAAAGACGCAACTCCTCTATCTCTTCGGTTGGGTGGTGCCGTAGCAGGGAGCTCTAGCGTATTTCTCAATTCCAGAATGGCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCGAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCTCCCAAGCCTTCATCTGGACCACACAAATCTAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCCCTGACATACCGTGAAGTCATTGCTATTCTGATGCAGCGACATGTCCTCGTTAATGGCAAAGTCAGGACGGACAAGACATATCCTTCTGGTTTTATGGATGTTGTATCCATCCCTAAAACAAATGAAAACTTCCGCCTGCTGTATGACACTAAAGGAAGATTCCGTCTTCACTCTGTCAGAGATGATGAAGCTAAGTTCAAACTCTGCAAGGTTCGCTCAGTACAGTTTGGGCAAAAAGGTATCCCATACCTGAACACGTATGATGGTCGCACCATCCGTTACCCAGACCCTGTCATCAGGGCTAATGACACCATCAAGTTGGACTTGGAGGAAAACAAAATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTGATGGTGACAGGTGGAAGGAATAGGGGGCGTGTTGGAGTGATAAAGAGCAGAGAGAAGCACAAGGGAAGCTTTGAGACTATCCATGTTCAAGATGTTACTGGGCACGAATTTGCAACTCGTTTGGGCAATGTGTTTACCATCGGCAAGGGAACAAAACCTTGGGTATCTCTTCCCAAGGGTAAAGGTATTAAGCTTTCAATCATCGAGGAAGCTAGGAAGAGGATTGCCGCCCAACAAGCAACTGCTGCTTAA 909 0.4598 MDQAHQFSRLGFLKDATPLSLRLGGAVAGSSSVFLNSRMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVNGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKSREKHKGSFETIHVQDVTGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIAAQQATAA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03792 302 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 39 292 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst3g03792 302 FunFam 40S ribosomal protein S4 213 283 - -
Spst3g03792 302 Pfam KOW motif 215 248 IPR005824 -
Spst3g03792 302 ProSitePatterns Ribosomal protein S4e signature. 46 60 IPR018199 -
Spst3g03792 302 Gene3D - 39 155 IPR036986 GO:0003723
Spst3g03792 302 FunFam 40S ribosomal protein S4 160 210 - -
Spst3g03792 302 CDD KOW_RPS4 213 267 IPR041982 -
Spst3g03792 302 Gene3D - 160 210 IPR038237 -
Spst3g03792 302 FunFam 40S ribosomal protein S4 39 155 - -
Spst3g03792 302 CDD S4 89 150 - -
Spst3g03792 302 SMART s4_6 80 144 IPR002942 GO:0003723
Spst3g03792 302 Pfam S4 domain 85 128 IPR002942 GO:0003723
Spst3g03792 302 ProSiteProfiles S4 RNA-binding domain profile. 80 142 - -
Spst3g03792 302 Pfam RS4NT (NUC023) domain 41 77 IPR013843 -
Spst3g03792 302 SMART kow_9 212 239 IPR005824 -
Spst3g03792 302 Gene3D - 213 283 IPR014722 -
Spst3g03792 302 Hamap 30S ribosomal protein S4e [rps4e]. 45 276 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst3g03792 302 Pfam 40S ribosomal protein S4 C-terminus 250 296 IPR032277 -
Spst3g03792 302 Pfam Ribosomal family S4e 133 207 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03792 Spst-Chr3 87927978 87932474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03792 39 299 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.188 0.0 509