Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03755 ATGATGAAAACGAGACACTCTCGGATTCGGAAATCGACCAAGCCCTCCTGGACGCTTACGCTCACGCTGCTCGTCACCTGCTGCTTCCTCGTTCTCATTCTCCTCACTCTCCGCATTCTCTCCGTTACCAATGCTAACTCCTCCTCTGCTCTCTCCAAGCCCAACGATCTTAGCTCCATCGCTCGTAACTCTCACGTAAGCCAAGAAGGCGACGATCAGGGAGAGAAGTGGGTTGAAATAATATCCTGGGAGCCCAGAGCTTTTCTCTATCATAATTTTCTGACCAAGGAGGAATGCGAATATCTAATTAATATAGCGAAGCCAAACATGCATAAATCATCAGTTGTTGATAGTGAAACTGGAAAGAGTACAGACAGCAGAGTACGGACTAGCTCTGGTGCTTTTCTGGCCAGAGGACGTGATAAAATTGTGAGGGATATTGAAAAAAGAATTGCTGATTTTACTTTTGTACCCGTAGGCCTGCATGAGACTGATATCTGTGAAGTTGAACATGGTGAAGGACTTCAAGTTCTCCATTATGAAGTTGGACAAAAGTATGAGGCTCATTTTGACTACTTTCAGGATAACTTTAACACTAAGAATGGGGGACAGCGGATAGCAACAATGCTGATGTACCTTTCAGATGTCGAAGAAGGGGGTGAGACAGTGTTCCCAGATGCGAAGGGAAATTTTAGCTCTGTGCCTTGGTGGAATGAGCTTTCTGAATGTGGAAAAGAAGGACTTTCAATTAAACCAAAGATGGGTGATGCTTTACTTTTCTGGAGCATGAAGCCTGATGCAACCTTAGATCCATCTAGTTTGCATGTTAGGGGCGGAAGAAAAATGTATGAAACGAATAGATGGAATGAGTATAGACCACAGGCTTTTCACGCGGTGTTTTATGTTTCCGATCATAAGTTCATGGAGACAATTCCCTTCCCTGGCTCCGTACAACCTATTGAGGCCACCATTTGCATAGCAAACGGCACTCGAATTTTCTGGGATACCCACATGGAGTTTGTGCCAAATCAATGCCCTTTGATGGGTTACTCCGGCAATTTCGTAGAGAGGGTCAAAAGGGTTGGTACCCTCTTTGTCTCAGCCATCATTGGGAACATTTTATCAGCGATCTTGACCTTCTGCTTCGCATTAGTGGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTAGAGGAGCTGCTATTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCCTTCTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGCCTTATATTTGATTGATGTTTTTGCTAGCCTATTGAGTGGGAGACTAGTGCGTGAAAGAATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTTCAAAACCTCTTTGACATAGGTGTGACCAAAGGCTTGGCGAGAGATTCAGTAGAAAAGATCCCAACGATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAGAGAGTTTCATGTTCTGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGATAACTGGTTGATCAAGCATGCTTCTTGTCCATTATGCAGAAGGGATCTGTAA 1707 0.4458 MMKTRHSRIRKSTKPSWTLTLTLLVTCCFLVLILLTLRILSVTNANSSSALSKPNDLSSIARNSHVSQEGDDQGEKWVEIISWEPRAFLYHNFLTKEECEYLINIAKPNMHKSSVVDSETGKSTDSRVRTSSGAFLARGRDKIVRDIEKRIADFTFVPVGLHETDICEVEHGEGLQVLHYEVGQKYEAHFDYFQDNFNTKNGGQRIATMLMYLSDVEEGGETVFPDAKGNFSSVPWWNELSECGKEGLSIKPKMGDALLFWSMKPDATLDPSSLHVRGGRKMYETNRWNEYRPQAFHAVFYVSDHKFMETIPFPGSVQPIEATICIANGTRIFWDTHMEFVPNQCPLMGYSGNFVERVKRVGTLFVSAIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLLLWKSDESGIGCALYLIDVFASLLSGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGVTKGLARDSVEKIPTITITSDNNVDASGERVSCSVCLQDFQLGETGRSLPHCHHMFHLPCIDNWLIKHASCPLCRRDL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03755 568 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
Spst3g03755 568 FunFam NEP1-interacting protein-like 1 483 568 - -
Spst3g03755 568 CDD RING-H2_NIPL1-like 522 565 - -
Spst3g03755 568 Gene3D q2cbj1_9rhob like domain 77 289 - -
Spst3g03755 568 Pfam Ring finger domain 522 565 IPR001841 -
Spst3g03755 568 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 171 342 IPR005123 -
Spst3g03755 568 SMART p4hc 85 297 IPR006620 GO:0005506|GO:0016705|GO:0031418
Spst3g03755 568 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 353 567 IPR044523 -
Spst3g03755 568 SUPERFAMILY RING/U-box 522 568 - -
Spst3g03755 568 Pfam 2OG-Fe(II) oxygenase superfamily 175 275 IPR044862 -
Spst3g03755 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 568 IPR013083 -
Spst3g03755 568 FunFam Prolyl 4-hydroxylase 4 77 292 - -
Spst3g03755 568 SMART ring_2 523 564 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03755 Spst-Chr3 87551541 87560347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03755 353 568 C3H Transcription Factor Family AT5G66070 73.148 8.47e-107 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03755 K00472 - gmx:100816939 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00945 2 8123269 8125200 Spst3g03755 3 87551541 87560347 PCT