LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03722	ATGGGTCTCTGCTTTTCTTCCTCTTCACTCAAGAACCCTCAGCATTCAGGCAACAACGACGGGGAAGGGTTTCTCCCTCTTCCTCCTCCTGATGGCCGGATTCTGAAATGGCCCAACTTGGTGGTGTTCAGTTATGAGGACCTGAAATACGCCACAAGGAATTTCAAGTCTGACACATTGATCGGTGAAGGTGGTTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCTACCAAACCAGGCTCCGGAATTGATGTTGCCATCAAAAAGTTCAACAAGGAAGGGCTCCAAGGGTTTCAACAGTGGCAGTCAGAAATAACCTTTTTCGGAAGGCTTTCTCACCCCAACCTGGTCAACTTATTGGGTTACTGCTGGGACGAAGATGAATTTCTTCTTGTGTACGAGTTCATGCCATACGGAAGTTTAGAGAATCATCTCTTCTCAAGAGATCCTGACAAAGAACCACTTTCTTGGAGTACCCGGTTAAAAATAGTTATTGGTGCGGCTAGGGGATTAACTTTCTTGCATGCCTCTGAAAATCAAGTCATACACAGAGATGTCAAGTGCTCAAATATACTACTCGACGCGAATTACGATGCAAAACTATCAGATTTTGGGTTGGCGAGATCAGGACCTTCAGACGGAAAAAATCATGTAAGTAGCAGGGTGATGAGCTTGGGGCCTTCTGAAGGAAATACTCACGTAACTACCACCATAATGGGCACATATGCTTATGTTGCTCCTGGATATAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGCGGGCACTTGACCCAGAACGACCTTCAGGACAGCAGATCCTGGTTGAATGGACTAAGCCTTGTCTCTCTTCCAAGAAAAAGTTGAAAACAATTATGGATGGGAGGATAGAGGGTCAATATTCACCCAAGGCTGCATTTGAAGCAGCACAACTTACTCTAAAATGCTTAGGCCATGACCCTAACCAGCGTCCTTCAATGAAGGAAGTACTTGAGGGATTGGAAGCCATTCAACTTCAACGACGGGGAGGTGTTTCTCCCTATACCTGCTCCTGTTGCCCGGATTCTGATGACCTGAAATACGTCACAAGGAATTTCATGTCTGACGCATTGATCGATCAAGGCGGTTTTGGCAGAGTTTACGAGGGATGGTTGGATGAGAACACCCTCACCCCTACCGAACCAGGCTCCGGAATTGTTGCTGCCATCAAAATGTTCAACAAGGAAGGCTTGCAAGGGTTTCTAATAGTGGTAGGAAATCCTTACAAAGAACCACTTTCTTGGAACACCCGGTTAAAAATAGCCATTGATGCAGCCCGGGGATTAGCTTTCTTGCATGCTTCTGAAAAGCAAGTCATACACAAAGATTTCAAGCCCTCAAATATACTACTCGATGGGGTCAGTTAG	1440	0.4569	MGLCFSSSSLKNPQHSGNNDGEGFLPLPPPDGRILKWPNLVVFSYEDLKYATRNFKSDTLIGEGGFGRVYKGWLDENTLTPTKPGSGIDVAIKKFNKEGLQGFQQWQSEITFFGRLSHPNLVNLLGYCWDEDEFLLVYEFMPYGSLENHLFSRDPDKEPLSWSTRLKIVIGAARGLTFLHASENQVIHRDVKCSNILLDANYDAKLSDFGLARSGPSDGKNHVSSRVMSLGPSEGNTHVTTTIMGTYAYVAPGYKSDVYGFGVVLLEILTGMRALDPERPSGQQILVEWTKPCLSSKKKLKTIMDGRIEGQYSPKAAFEAAQLTLKCLGHDPNQRPSMKEVLEGLEAIQLQRRGGVSPYTCSCCPDSDDLKYVTRNFMSDALIDQGGFGRVYEGWLDENTLTPTEPGSGIVAAIKMFNKEGLQGFLIVVGNPYKEPLSWNTRLKIAIDAARGLAFLHASEKQVIHKDFKPSNILLDGVS	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g03722	479	Gene3D	Transferase(Phosphotransferase) domain 1	141	356	-	-
	Spst3g03722	479	Pfam	Protein tyrosine and serine/threonine kinase	58	344	IPR001245	GO:0004672\|GO:0006468
	Spst3g03722	479	ProSiteProfiles	Protein kinase domain profile.	55	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g03722	479	SMART	serkin_6	55	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g03722	479	FunFam	Lectin-domain containing receptor kinase A4.3	141	354	-	-
	Spst3g03722	479	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	186	198	IPR008271	GO:0004672\|GO:0006468
	Spst3g03722	479	SUPERFAMILY	Protein kinase-like (PK-like)	34	346	IPR011009	-
	Spst3g03722	479	CDD	STKc_IRAK	61	348	-	-
	Spst3g03722	479	Gene3D	Phosphorylase Kinase; domain 1	357	423	-	-
	Spst3g03722	479	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Spst3g03722	479	Gene3D	Phosphorylase Kinase; domain 1	40	140	-	-
	Spst3g03722	479	MobiDBLite	consensus disorder prediction	1	19	-	-
	Spst3g03722	479	FunFam	Serine/threonine-protein kinase BIK1	29	140	-	-
	Spst3g03722	479	SUPERFAMILY	Protein kinase-like (PK-like)	367	476	IPR011009	-
	Spst3g03722	479	ProSitePatterns	Protein kinases ATP-binding region signature.	61	94	IPR017441	GO:0005524
	Spst3g03722	479	Gene3D	Transferase(Phosphotransferase) domain 1	424	478	-	-
	Spst3g03722	479	PANTHER	OS01G0588500 PROTEIN-RELATED	437	477	-	-
	Spst3g03722	479	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03722	Spst-Chr3	87259920	87265571	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g03722	369	477	Glycoside Hydrolase	AT3G07070	30.968	4.30e-14	72.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Spst3g03722		PK_Tyr_Ser-Thr	1.9e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03722	-		-	gmx:100794193	487.648