Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03720 ATGGGTCTCTGCTTCTCCTCCTCTCACACTTCTTCCCGCAACCCTCCTAACTACTCAGGCAAGTCTTCAACTTTCCCACTCTTTTCTCTAATCAAAATATCCCATAACCGGTTCGATTTGGTTTTGATTTCAGGTTCAGCGAGTGCTGACAGCAAGAACGTGGGGTTCTCGGCGACCACTAGCAGTTTCGGGAAGAGCCAATTCTCGGAGATGGCGAGTGGGAGCATCGATAGCGAAGGGTCTCTTCCATTTTGTTCCCCTGATGGCCAGATTCTGGAACGACCCAACTTGAAGGAGTTCAGTTTCGGGGACCTGAAATCTGCGGCTAAGAGTTTCAAGGGAGACACATTGCTGGGTGAAGGTGGGTTTGGCAGAGTCTACAAGGGGTGGTTGGATGAGAAGAATCTCACCCCTGCCAAACCAGGCTCTGGCATGGTCGTCGCCATAAAAAAATTGAACCCCCAAAGCACCCAAGGCTTCCAAGAATGGAAGACTGGAGAGTCCGAAGTGAACTTTTTAGGAAGGCTTTCCCACCCCAACCTGGTCAAGTTATTGGGCTACTGTTGGGATGAGGAAGAACTTCTTCTTGTGTACGAGTTCATGCCTAAAGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATCCTAACATAGAACCACTTTCTTGGAGCACCCGGCTTAAAATAGCTATTGGTGCAGCTCGTGGACTAGCTTTCCTGCATGCCTCCGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTTCTCGACGGGAATTACAATGCAAAAATATCAGATTTTGGCTTGGCTAAATTGGGGCCATCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGCACATATGGTTATGCTGCTCCAGAATATATCGCAACAGGCCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTGCTTGAAATAATGACAGCCATGAGGGCACTTGACACAAGAAGACCAACAGGGCAGCAGAACCTGGTTGAATGGACTAAGCCTTGTCTCTCTTCCAAGAAAAAGTTGAAAACAATTATGGATGGTAGGATAGAGGGTCAATATTCACCCAAGGCTGCATTGGAAGCAGCACAGCTTACTCTAAAATGCCTAGAGCATGACCCTAAACAGCGTCCTTCAATGAAAGAAGTACTTGAGGGATTGGAAGCCATTGAAGCTATCCATGAAAAGTCCAAGGAATCCAAAACCCGCAATTCTCACCACACTTCTCATCAGCATCCTCGGCAGAGAGTTGTGAGGGTATAA 1293 0.4687 MGLCFSSSHTSSRNPPNYSGKSSTFPLFSLIKISHNRFDLVLISGSASADSKNVGFSATTSSFGKSQFSEMASGSIDSEGSLPFCSPDGQILERPNLKEFSFGDLKSAAKSFKGDTLLGEGGFGRVYKGWLDEKNLTPAKPGSGMVVAIKKLNPQSTQGFQEWKTGESEVNFLGRLSHPNLVKLLGYCWDEEELLLVYEFMPKGSLENHLFRRNPNIEPLSWSTRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEIMTAMRALDTRRPTGQQNLVEWTKPCLSSKKKLKTIMDGRIEGQYSPKAALEAAQLTLKCLEHDPKQRPSMKEVLEGLEAIEAIHEKSKESKTRNSHHTSHQHPRQRVVRV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03720 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Spst3g03720 430 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g03720 430 FunFam Serine/threonine-protein kinase PBS1 201 417 - -
Spst3g03720 430 Gene3D Phosphorylase Kinase; domain 1 96 200 - -
Spst3g03720 430 ProSiteProfiles Protein kinase domain profile. 112 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03720 430 ProSitePatterns Protein kinases ATP-binding region signature. 118 151 IPR017441 GO:0005524
Spst3g03720 430 MobiDBLite consensus disorder prediction 406 430 - -
Spst3g03720 430 SUPERFAMILY Protein kinase-like (PK-like) 92 398 IPR011009 -
Spst3g03720 430 CDD STKc_IRAK 118 400 - -
Spst3g03720 430 Pfam Protein tyrosine and serine/threonine kinase 116 396 IPR001245 GO:0004672|GO:0006468
Spst3g03720 430 PANTHER OS01G0588500 PROTEIN-RELATED 53 401 - -
Spst3g03720 430 FunFam Serine/threonine-protein kinase BIK1 81 200 - -
Spst3g03720 430 Gene3D Transferase(Phosphotransferase) domain 1 201 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03720 Spst-Chr3 87233556 87237855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03720 88 397 Glycoside Hydrolase AT3G07070 48.232 7.63e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst3g03720 PK_Tyr_Ser-Thr 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03720 - - gmx:100794193 684.485