Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03718 ATGCACAGTGCTGAAATTTCAAAGCAACCAGCCTCATCTCCAAATATCACACACAAAGGAAACACATTCTATTTGAATGCGATAGTAAGAGCGAGTTATTTCACAGCACACGGATCGTTGACGTGGCGAAAGATCGTCGAAATCCCGCGTAAAACCCCAACTTCAATTTTTTCGCGATTCGATTTTCAATTGCGTTTTCTCTACACTGCCCCTCCCCACAACCCTTCTTATCCCCTCCTCTCGCGCCCAAACCTCACAACACAGTGCACTCTCACCTTTTCCCTTCTCTCCTTGAAACCCTTGCTCCTCGCCGACTTTGTCCGAGTCTTTCCGCTTTCACTGAGTTTCGCCATGCCGAAGGTTAAAGCTGATTCCAAAGCCGCCGATAACAGGTTGAAGCGCAAAGGCGTTGGTGCAGGAAGGAAGCAAACAAAGAAAGCTGCTAAGGATCCCAACAAGCCTAAGAGACCTCCCAGTGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAGCTGTTTAAGAAGGATCATCCTACCAACAAATCCGTTGCTGTTGTTGGGAAAGCTGGTGGTGATAAATGGAAATCTATGTCTGATGCTGAAAAGGCCCCTTTCATTGCTAGGGCTGAGAAGAAAAAAGAAGAGTATGAGAAAAGTATCTCAGCCTACAATAAGAAATTGGAAGGAAAGAATTCAGAGGAAGAAGAATCTGACAAGTCAAAATCTGAAGTTAATGATGAGGAGGAAGAGGAGGAGGATGATGAAGATGATGAGTGA 774 0.4496 MHSAEISKQPASSPNITHKGNTFYLNAIVRASYFTAHGSLTWRKIVEIPRKTPTSIFSRFDFQLRFLYTAPPHNPSYPLLSRPNLTTQCTLTFSLLSLKPLLLADFVRVFPLSLSFAMPKVKADSKAADNRLKRKGVGAGRKQTKKAAKDPNKPKRPPSAFFVFMSEFRELFKKDHPTNKSVAVVGKAGGDKWKSMSDAEKAPFIARAEKKKEEYEKSISAYNKKLEGKNSEEEESDKSKSEVNDEEEEEEDDEDDE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03718 257 MobiDBLite consensus disorder prediction 239 257 - -
Spst3g03718 257 Gene3D High mobility group box domain 138 241 IPR036910 -
Spst3g03718 257 SMART hmgende2 153 224 IPR009071 -
Spst3g03718 257 SUPERFAMILY HMG-box 141 225 IPR036910 -
Spst3g03718 257 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 122 256 IPR031061 -
Spst3g03718 257 Pfam HMG (high mobility group) box 154 223 IPR009071 -
Spst3g03718 257 Coils Coil 205 249 - -
Spst3g03718 257 MobiDBLite consensus disorder prediction 221 238 - -
Spst3g03718 257 CDD HMG-box_AtHMGB1-like 155 208 - -
Spst3g03718 257 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 154 223 IPR009071 -
Spst3g03718 257 MobiDBLite consensus disorder prediction 127 158 - -
Spst3g03718 257 MobiDBLite consensus disorder prediction 221 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03718 Spst-Chr3 87205945 87207339 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Spst3g03718 HMG_box 1.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03718 K25507 - gmx:100499992 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03718 3 87205945 87207339 Spst3g03718 3 87205945 87207339 ECH