Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03711 ATGTATTGGTCGTCGCAGTGGTTCCATGGCATGGTTCATCAGGACATTCAAGCAAGCAGCACGGGCATGCCGTACATTGAAAAAGCTCTTGCAGGACAATCCAACATGACAAAGATTTGGCTTTTTGTCCTCCTTATGTTCTACCATGGCCTTCCTTCAGAGGGAATAAGCACAAGACCAAGTACAGTTAACATAGGCGCACTTATGTCCTTCAATTCAACTGTTGGCAGAGTGGCTAAAGTTGCTATAGAAGCTGCAGTGGATGATGTGAACTCAGATGCAACTATTCTTAATGGAACTATGCTTAAGATTTCAATGTTCGATACTAAATTATCCACTGGATTCCTAGGAATCGTTGACTCATTAAGATTGATGGAGAATGACACTGTGGCCATAATTGGTCCCCAGTTCTCAGTGATGGCTCACGTGATTTCACATATTGCAAATGAGTTGCAAGTGCCACTCCTCTCATTTGCAGCAACAGACCCTACACTGACTTCACTGCAGTTCCCGTATTTTGTTCGGACAACTCACAGTGATCTGTATCAGATGATTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATATCATAGCCATTTACATTGATGATGATCATGGAAGAAATGGGGTGTCTGCTTTAGGGGATAAGCTAGCAGAAAAACGTGGTAAAATATCACATAAAGCAACGTTTAAGCCTGGTAACGTTACTAGGGAAGAAATAAACAGTGCATTGGTTAAGATAGCTTTAATGGAATCAAGGGTAATAGTGCTTCACATATACCCTTCTTTTGGTCTAGATGTATTGAATGTGGCTCGGTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATAGCCACAGACTGGCTTTCTACACTACTGGATTCAAACCCATCATTGTTCACCACTCAATCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTATACGCCCGAGTCTGAAATCAAAAGAAAATTTAGTTCTAGTTGGAACAAACTGAGCAAAGAAAAGGATCCTTTTGAGGGTCCTTTTCCATTGAACACTTTTGGCTTTTACGCCTATGACACTGTTTGGGTACTTGCATCTGCACTCGATGCATTTTTTAGGAGTGGGGGAACTTTGTTATTTTCAAATGAATCAAGTTTAAACATGTTACGGGGGGATGCTCTTCACCTTGATACCATGGGGGTCTTTCTTGATGGTGGCAAGTTGCTTCAAAAAATTTTAGATGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACCTCTGGCCTCCACACTGGGGAAGCTCCTAATCATTCCAATTTTAGTGAAGTACTATATGGTGTCATCTGGCCTGGTCAAACAACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAAAAACTTAAGAATTGGGGTGCCACTTAGAATTAGCTACCGTGAGTTTTTGTCAAGAACTGAGGGAAGTGAGATGTTTGGTGGTTATTGCATAGACGTGTTCACTGCTGCCATCCGCTTGTTGCCTTATCCCGTTCCCTACAAGTTTGTTCCATTTGGAGATGGTAAAACCAACCCACCAAATACAAAACTTCTCAACATGATCAGTATTGGGAAGTTCGATGCTGTTGTGGGAGACATAACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCAATAAGGAAGATGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCCGTCGTGTGGATTTTGGAACGTCGCTTAAATGATGACTTCAGAGGCCCAGCTAGAAGGCAATTTGTGACCATTTTATGGTTTAGCTTTTCAACCCTGTTTTTTTCTCATCGAGAGAAAACTGTGAGCACCCTTGGTCGTTTCGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTCACCTCCATCCTAACAGTGGAACAACTCTCTTCCACAGTGAAGGGAATTGAAAGCTTAGCAACAAGTGATGAACGCATTGGTTTCCTGAGTGGCTCTTTTGCTGAAAATTATCTGACAGAGGAGCTCAACATACACAGATCAAGGCTTGTTCCTCTCAACTCCCCATCAGAATATGAAAAGGCCCTGAAGGATGGACCTGCTAATGGGGGTGTCACTGCAATAATAGATGAACGTGCGTACATGGAACTGTTCCTGTCTACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCAAAGAGACTCTCCTCTGGCAATTGACATGTCCACTGCCATCTTAAAACTCTCAGAGAATGGTGATCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGTAGCTCAGAGGGTGCAAAACAAGGCATAGATCGTCTTGAGCTAAAAAGCTTCTGGGGTCTGTTCCTACTTAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTGCAAGAATGGCCTACTGTTTTAGCAGACACTCCAACAGAAACTCCAAAGGCTCATCACACTCTGCTCGTCTTCGATCATTCTTGACCTTTGTGAATGAACGAGAAGACGAAGACAAAAGTGCGTCAAAGAGAAAACGAACCGAAAAGGGGTGTAGTCGAAGGGTGGCGCATGAAGAAGAATTGGATGGGTCAAGTGTTGGTGTCCATGTTGAAAATTAG 2772 0.4304 MYWSSQWFHGMVHQDIQASSTGMPYIEKALAGQSNMTKIWLFVLLMFYHGLPSEGISTRPSTVNIGALMSFNSTVGRVAKVAIEAAVDDVNSDATILNGTMLKISMFDTKLSTGFLGIVDSLRLMENDTVAIIGPQFSVMAHVISHIANELQVPLLSFAATDPTLTSLQFPYFVRTTHSDLYQMIAVAEIVDHFQWRDIIAIYIDDDHGRNGVSALGDKLAEKRGKISHKATFKPGNVTREEINSALVKIALMESRVIVLHIYPSFGLDVLNVARSLGMMGSGYVWIATDWLSTLLDSNPSLFTTQSMNDIQGVITLRMYTPESEIKRKFSSSWNKLSKEKDPFEGPFPLNTFGFYAYDTVWVLASALDAFFRSGGTLLFSNESSLNMLRGDALHLDTMGVFLDGGKLLQKILDAVELGGLVIGLKPLASTLGKLLIIPILVKYYMVSSGLVKQLKPHVDGFFPAMEKNLRIGVPLRISYREFLSRTEGSEMFGGYCIDVFTAAIRLLPYPVPYKFVPFGDGKTNPPNTKLLNMISIGKFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRLNDDFRGPARRQFVTILWFSFSTLFFSHREKTVSTLGRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSTVKGIESLATSDERIGFLSGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLSTRCEYGIVGQEFTKMGWGFAFQRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFIALLCYVARMAYCFSRHSNRNSKGSSHSARLRSFLTFVNEREDEDKSASKRKRTEKGCSRRVAHEEELDGSSVGVHVEN 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03711 923 FunFam Glutamate receptor 179 337 - -
Spst3g03711 923 Pfam Receptor family ligand binding region 81 413 IPR001828 -
Spst3g03711 923 Pfam Bacterial extracellular solute-binding proteins, family 3 495 811 IPR001638 -
Spst3g03711 923 SMART GluR_14 471 812 IPR001320 GO:0015276|GO:0016020
Spst3g03711 923 Gene3D - 581 715 - -
Spst3g03711 923 FunFam Glutamate receptor 465 581 - -
Spst3g03711 923 Pfam Ligand-gated ion channel 812 843 IPR001320 GO:0015276|GO:0016020
Spst3g03711 923 SUPERFAMILY Periplasmic binding protein-like I 59 412 IPR028082 -
Spst3g03711 923 MobiDBLite consensus disorder prediction 884 917 - -
Spst3g03711 923 FunFam Glutamate receptor 581 711 - -
Spst3g03711 923 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 76 92 - -
Spst3g03711 923 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 137 165 - -
Spst3g03711 923 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 357 369 - -
Spst3g03711 923 Gene3D - 728 817 - -
Spst3g03711 923 FunFam Glutamate receptor 707 814 - -
Spst3g03711 923 CDD GluR_Plant 468 810 - -
Spst3g03711 923 Gene3D - 179 347 - -
Spst3g03711 923 SUPERFAMILY Periplasmic binding protein-like II 468 812 - -
Spst3g03711 923 PIRSF IGluLR_plant 461 918 IPR017103 -
Spst3g03711 923 PIRSF IGluLR_plant 33 423 IPR017103 -
Spst3g03711 923 Gene3D - 464 580 - -
Spst3g03711 923 MobiDBLite consensus disorder prediction 884 923 - -
Spst3g03711 923 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 63 872 IPR015683 -
Spst3g03711 923 Gene3D - 81 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03711 Spst-Chr3 87159133 87163774 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03711 36 896 Ion Channels AT1G42540 54.386 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03711 K05387 - gmx:100790502 1447.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03711 3 87159133 87163774 Spst3g03711 3 87159133 87163774 ECH