Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03705 ATGACACGCGGGCTAAGACTCCTCCAATCCGTCGCCGCGCCACCGCCGGAAGAAGCCGCCGCCGTCGAGTCCGACTTCGTGGTCATCCTGGCCGCGCTCCTCTGTGCGCTCATTTGCGTGGTGGGCCTCGTCGCCATCGTGCGTTGCGCCTGGCTCCGCCGGTCACCGGCTTCCGTCGCCGGCGGAGGCCCGCCGTCGACGGCCAACAGGGGCCTGAAGAAGAAGGTGGTGAATTCGCTTCCCAGGTTCACGTACGCCGGCGACGGCGAGCGGTACAAGTGGTCGGAGTGCGCTATCTGCCTGACGGAGTTCGCCGGGGGCGACGAGGTCCGCGTGCTGCCGCAGTGCGGACACGGGTTCCACGTGGCGTGCGTGGACACATGGCTCGTGTCACACTCCTCGTGCCCCTCGTGCCGTGCGCCCTTCGCCGTCGCACGCTGCCAGAAGTGCGGTCACTTCCCGGCGGTCGCATCGGGTACCAGCGAACCGGAGACAAAGCCCGGCGGCGGCGGCGGCAATGCCGATAATAACGGTGCGAATGGTAGTCGTAATGTAATTGTTACAAACGGGTTTAGTAATTACGGTTTCTTGCCTTGA 597 0.6533 MTRGLRLLQSVAAPPPEEAAAVESDFVVILAALLCALICVVGLVAIVRCAWLRRSPASVAGGGPPSTANRGLKKKVVNSLPRFTYAGDGERYKWSECAICLTEFAGGDEVRVLPQCGHGFHVACVDTWLVSHSSCPSCRAPFAVARCQKCGHFPAVASGTSEPETKPGGGGGNADNNGANGSRNVIVTNGFSNYGFLP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03705 198 SUPERFAMILY RING/U-box 91 145 - -
Spst3g03705 198 CDD RING-H2_EL5-like 96 139 - -
Spst3g03705 198 SMART ring_2 97 138 IPR001841 -
Spst3g03705 198 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 151 - -
Spst3g03705 198 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Spst3g03705 198 MobiDBLite consensus disorder prediction 158 181 - -
Spst3g03705 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 152 IPR013083 -
Spst3g03705 198 Pfam Ring finger domain 96 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03705 Spst-Chr3 87056863 87057459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03705 1 176 C3H Transcription Factor Family AT1G76410 55.738 2.93e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03705 - - gmx:100813341 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03705 3 87056863 87057459 Spst3g03705 3 87056863 87057459 ECH
Spst3g03705 3 87056863 87057459 Spst9g01746 9 19328106 19328783 ECH
Spst3g03705 3 87056863 87057459 Spst3g03705 3 87056863 87057459 PCT