Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03692 ATGAGTGATGCAAAAGAGAATGAGGAAGCAGGGCAGAATGTACCCTTGGCTGTGAAAGAAACTCAGCAGTTGGTTGCACAGGTTCAACAAGAAGTTTTGGCTGCTCCTTTGTCCATACCGGATACTTCAAACCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTGTGGAGGATAAAATTGTGAAACCAGAAGCCAATTCAGAGAGCATTCCGCAACAAGATGTCCTAAATAGTGAAAGTACTTTAAACTCGGTCCCTGTAATTGAAGATGCTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATCAGATGTGAAGAGAAAAGTAGAACTACTTCCTGAGTGTTATAAGGACATAGAGAAAGATACTAATGTTTGTCAAAGCAATGCTGATACTGCTGAAATGATTGTGGAGGTGAAGCCCAAAGCATTTGAAGCGGGTGAAAGTAAAACTTGCGAAAATGGAGACTCCAACTCTGCACACCCTATATACAATGAGCCTAACACAGCAAATGCTGTTCATACTGATATAAGATCTGAAATCAAGAGTGGATTAGACGATGAGAATAAGTATAATGAAAAACAGGCTGCTGTTGCACATGCAGATAATGGAAATTTGATCTCACAGAACTTGTATTTTTTGGATCCTGACTATTCATATGATGGTAATGAGTCGGGAACAGAAGAGGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACTTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTAAACAGATTGGGCGGCTATGATAAGGTCACCTCGTGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGTGATTCTTGATTAA 945 0.4085 MSDAKENEEAGQNVPLAVKETQQLVAQVQQEVLAAPLSIPDTSNHAENGKVEAEAPVEDKIVKPEANSESIPQQDVLNSESTLNSVPVIEDAPVLNKTEGENASDVKRKVELLPECYKDIEKDTNVCQSNADTAEMIVEVKPKAFEAGESKTCENGDSNSAHPIYNEPNTANAVHTDIRSEIKSGLDDENKYNEKQAAVAHADNGNLISQNLYFLDPDYSYDGNESGTEEEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKVILD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03692 314 SMART bright_3 230 314 IPR001606 GO:0003677
Spst3g03692 314 ProSiteProfiles ARID domain profile. 229 314 IPR001606 GO:0003677
Spst3g03692 314 Pfam ARID/BRIGHT DNA binding domain 232 313 IPR001606 GO:0003677
Spst3g03692 314 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 49 313 IPR045147 GO:0006357
Spst3g03692 314 CDD ARID 231 314 - -
Spst3g03692 314 FunFam AT-rich interactive domain-containing protein 3 229 314 - -
Spst3g03692 314 SUPERFAMILY ARID-like 223 313 IPR036431 GO:0003677
Spst3g03692 314 Gene3D - 229 314 IPR036431 GO:0003677
Spst3g03692 314 SMART ARID_2 226 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03692 Spst-Chr3 86933259 86935817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03692 224 314 ARID Transcription Factor Family AT1G76510 67.033 2.06e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst3g03692 ARID 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03692 - - gmx:100803374 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03692 3 86933259 86935817 Spst3g03692 3 86933259 86935817 ECH
Spst3g03692 3 86933259 86935817 Spst3g03693 3 86937320 86940223 PCT