Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03690 ATGGTGTTTAGTCCGGATGGAAACTTAGCGCATCCATCATATGAAATCATCAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAAACCTCTGGCCTCCATACTGGGGAAGATCCCAATCCCTCAAATTCTAGTAAGGGACTGTATGGGGTCATTTGGCCAGGTCAAACAATCCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAGATACTTAAGAGTTGGGGTGCCACTTAGAATTGGTGGCGCTGAGTTTGTGTCAAGAATTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCTCTCCACTTGTTGCCTTATCCGGTACCATTCAAGTTCATTCCATTTGGTGATGGTAAAACTTACACGATAAACTCAGATCTTCTTCACATGATAACAATTGGTGTCTTCGATGCTGTGGTGGGAGACATTACTATCACTACTAACCGAACTAAGATAGTGGACTTTACACAGCCTTATATTGAGTCTGGTCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCACTGCTTGGGCTTTCCTAAGACCATTCACTCCAATGATGTGGTTTGTGACTGGAATGTTTTTCTTGGTGGTGGGAGTTGTTGTGTGGATTTTAGAGCGTCGCATGAATGATGACTTTAGAGGCCCCGCTAGAAGACAGTTTGTCACCATTATTTGCTATATTGCAAGTCTCACCTCCATCCTCACTGTAGAGCAACTCTCTTCACCGGTTAAAGGAATTGAAAGCTTACTAATAAGCAATGATCGCGGTTTCCGGAGAGGTTCATTTGCTGAGAATTATCTGACCGAGGAGCTCAACGTGCACAAGTCTAGGCTTGTTCCTATCAGTTCACCATCAGAATGTGAAAAAGCCTTGAAGGATGGACCAGCAAATGGTGGTATTGCTGCAATAATAGATGAACGTGCATATATGGAGCTCTTCCTGTCCACCAGATGTGAATTTGGTATCGTTGGTCAGGAGTTCACCAAGATGGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCTCTAGCAATTGATATGTCAACTGCCATCCTTAAACTATCAGAAAACGGTGACCTCCAGAGAATTCATGATAAATGGCTAACAAGAAGTGCCTGCAGTTCAGAGGGTGCAAAACAAGAGATAGACAGACTTGAGCTAAAAAGCTTTTGGGGTCTCTTCCTACTTAGTGGCACGGTATGCTTCATTGCTCTCTTTTGTTATGTTATTAGAATGGTTTACCATTTCAGCAGGCACTCCAACAATAACCTTGAGGGCTCATCTCACTCTGCTCGTTTTCTATTGTTCCTTTCCTTTGTTAATGAAAAAGAAAGGAAAGACGCAAAAGGAGAAGTGATCTTGTAG 1398 0.4313 MVFSPDGNLAHPSYEIINVIGTGIRRIGYWSETSGLHTGEDPNPSNSSKGLYGVIWPGQTIQTPRGWVFSSNGRYLRVGVPLRIGGAEFVSRIEGTEMFGGYCIDVFTAALHLLPYPVPFKFIPFGDGKTYTINSDLLHMITIGVFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSTAWAFLRPFTPMMWFVTGMFFLVVGVVVWILERRMNDDFRGPARRQFVTIICYIASLTSILTVEQLSSPVKGIESLLISNDRGFRRGSFAENYLTEELNVHKSRLVPISSPSECEKALKDGPANGGIAAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFGFPRESPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQEIDRLELKSFWGLFLLSGTVCFIALFCYVIRMVYHFSRHSNNNLEGSSHSARFLLFLSFVNEKERKDAKGEVIL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03690 465 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 433 IPR015683 -
Spst3g03690 465 FunFam Glutamate receptor 71 187 - -
Spst3g03690 465 SUPERFAMILY Periplasmic binding protein-like II 52 381 - -
Spst3g03690 465 Gene3D - 2 75 - -
Spst3g03690 465 Gene3D - 241 348 - -
Spst3g03690 465 Gene3D - 238 378 - -
Spst3g03690 465 FunFam Glutamate receptor 276 383 - -
Spst3g03690 465 Pfam Ligand-gated ion channel 381 409 IPR001320 GO:0015276|GO:0016020
Spst3g03690 465 Gene3D - 76 186 - -
Spst3g03690 465 CDD GluR_Plant 76 379 - -
Spst3g03690 465 Gene3D - 187 231 - -
Spst3g03690 465 Pfam Bacterial extracellular solute-binding proteins, family 3 136 380 IPR001638 -
Spst3g03690 465 SMART GluR_14 77 381 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03690 Spst-Chr3 86908939 86911006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03690 1 455 Ion Channels AT1G42540 57.143 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03690 K05387 - gmx:100789442 793.112