Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03672 ATGGATCCTGGTCGCTATTCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCTGTCCACGAGCCGAACTTCCGGGTTGGTGGTTCCTACGATGAGAGAAGATTTATAGATGAAAGATATCAAAGGGATCCAATTTACCAGAGAAATAATTTCCACCCTGACATTTTGGACAGGGACGCTTATCTGCCACCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGGAGAGGCTATGACGAAGATTATCCAATTGACAGGGAATCTAGGCGGTTTCAGAGGCCTTATCATGAATCATATAATCAGATAGATGGTTTTAGGGATCGTGAGATTGATACCTACCCAGAATACGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATACTGACCGAGGATATGATAAGCCTGCCAGGTTTGTAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAATCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACCGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAAGTAGTAGAAGAGACAGTAATTGGAGGCGACGTGAGTCACGTGATCGGGAACGAGATAAGAGAGGTCATAGTCGGGAAGGAGATCTGAGTCCAAGAAGGAGGCACGAGCGATCACGTTCTCACTCTCGTTCGCAGTCACGATCTCGATCCCGGTCACATTCTCACTCGCATTCTCATTCCCGATCTCAATCTCGTGGATATGATGACCATCCAAGATCTAGGTCCCCTCGTGGTCGAAGCCATGGTCGAAATTACAGGGAAGATAGCTATACTGAGACTCGATATGATAAAAGTGAAAGACGGAGGGATCGTGATGATAAACGGCAGCGGGAGCATTATTCTGTGGCCCCATCTGCAACCGTAGTTGTGAAAGGTCTTTCCCAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGACCTCTTAGACATGTTCGTGTTATAAAGGAGAGGAATTCTGGCATCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTTGATGGCAGAAAACTTTTCTTCGAATATAGTAGTAAGCCAACTGGTGGTCCTGGTCCCGATGGAGCTATGAAGTCAGGTCACAATTATAAAAGCATTACAGTTCCGTCTGATTGGATGTGCACTGTATGTGGTTACATAAATTTTGCACGCCGGACATCCTGCTATCAGTGTAATGAGCCCCGAACAGATGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAGGAGCTACTGGAAAGAAAGGTTTGGAAGCTGGTCCAACTCATGTATTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTCTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAGTTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCTCTTGAGGCAACAAATGGCACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGCCCTGGTTCAGGAACTTCCGGAACGTCCCAATCAAGCAGTCTTGCAGCTGCCGCTATTGAGGCTGCTACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATATAATCCAGATGACAAACAACCTACTGGTCCAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGAATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCTCTGATCAAAATCAGAACAAAACATCTAATAACGAGTCTGAATCTTCTAAGGCTTCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACCACTGTTACATCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTTCAGGCTGCAGCAACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCCAAGGAAATAAAACTTGCCTCAAAGAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTAGAGTTGCTCTGGAAGACAATCAGGCTTCTGTTTCAGTGGATGATAAATCATATTCTGCTGGGCATTCTGCAAAGAATAAGTCAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCTGTTAGTAATAGTCTTGGAGGCACTGTAATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTATTCAAGTTCTACAGCTGTTGCATCATCTATGCAAAGTTCATCTTCAGCAAATGTTGATGCACAGACAGTTGCTACTCCTTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACCATCTGCAACTGTTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAGCGCACAAGGAACAACCTCAAACAACATACCGGGATCGTGCAGCTGAAAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGATCTTGACATTGGGGATTCAAGCCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGGGGACGTGTGGTTGGAGATGCCAACCTTGATACTTTCGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGGCTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACGGAACATAGGGCAGGACTTGGTAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTAGCCAGGTTTAGGGAGATGTCAGACAGTTAA 3204 0.4501 MDPGRYSLHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFIDERYQRDPIYQRNNFHPDILDRDAYLPPGPPPVGHWSQSKRRGYDEDYPIDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYTDRGYDKPARFVGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERSSRRDSNWRRRESRDRERDKRGHSREGDLSPRRRHERSRSHSRSQSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRNYREDSYTETRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISSSNSGATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQPTGPEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCSDQNQNKTSNNESESSKASDGSGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQASVSVDDKSYSAGHSAKNKSKNETMVRESNASNPGIHTTLAQVAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDTYSSSTAVASSMQSSSSANVDAQTVATPFRTDVSALGSYTPSATVGSGRRRFSEMPLPASAHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSSRDFASRKGDPMPFPPGVGGGRVVGDANLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDS 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03672 1067 SMART zf_4 416 440 IPR001876 -
Spst3g03672 1067 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 392 IPR000504 GO:0003723
Spst3g03672 1067 CDD OCRE_SUA_like 608 660 IPR035623 -
Spst3g03672 1067 SUPERFAMILY RNA-binding domain, RBD 467 556 IPR035979 GO:0003676
Spst3g03672 1067 PANTHER RNA-BINDING PROTEIN 202 1062 - -
Spst3g03672 1067 MobiDBLite consensus disorder prediction 229 253 - -
Spst3g03672 1067 Pfam OCRE domain 611 661 IPR041591 -
Spst3g03672 1067 MobiDBLite consensus disorder prediction 254 306 - -
Spst3g03672 1067 SUPERFAMILY RNA-binding domain, RBD 301 397 IPR035979 GO:0003676
Spst3g03672 1067 MobiDBLite consensus disorder prediction 163 309 - -
Spst3g03672 1067 MobiDBLite consensus disorder prediction 774 799 - -
Spst3g03672 1067 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Spst3g03672 1067 MobiDBLite consensus disorder prediction 65 86 - -
Spst3g03672 1067 Gene3D - 413 444 - -
Spst3g03672 1067 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
Spst3g03672 1067 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Spst3g03672 1067 MobiDBLite consensus disorder prediction 163 228 - -
Spst3g03672 1067 ProSiteProfiles G-patch domain profile. 989 1035 IPR000467 GO:0003676
Spst3g03672 1067 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Spst3g03672 1067 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 373 IPR000504 GO:0003723
Spst3g03672 1067 SMART rrm1_1 313 388 IPR000504 GO:0003723
Spst3g03672 1067 SMART rrm1_1 470 545 IPR000504 GO:0003723
Spst3g03672 1067 MobiDBLite consensus disorder prediction 659 686 - -
Spst3g03672 1067 MobiDBLite consensus disorder prediction 585 611 - -
Spst3g03672 1067 CDD RRM1_RRM2_RBM5_like 467 547 - -
Spst3g03672 1067 Gene3D - 448 580 IPR012677 -
Spst3g03672 1067 Gene3D - 275 412 IPR012677 -
Spst3g03672 1067 SMART G-patch_5 987 1033 IPR000467 GO:0003676
Spst3g03672 1067 SUPERFAMILY Ran binding protein zinc finger-like 409 444 IPR036443 -
Spst3g03672 1067 Pfam G-patch domain 990 1031 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03672 Spst-Chr3 86770669 86777994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03672 311 533 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 3.79e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03672 K13094 - gmx:100787998 1728.38