Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03671 ATGGAAGAAGACCAAGAGGCTCAGCAGCAAAGAGAAAATCAAGGGTCTGTTCCTGGGGAAGGAGAAGGATTAGAAGGTAATGGAGGAGGCGTTAACAACAAAGAGATTAGTCCTTTCACGTGCCAAATGTGCAACAAAGGTTTCAGCTCAGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACATCTCTGGAAAGCAGGTTCATAAGGAGAAACAAGGCACTAGTGATGTTGCAAAATCCAAGACAACGAAATGGGATTTAGTGGATGGCAACCCCACCTGTACCCTTTGTGGAAAGAGCTTCTCTTCCATGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGCCGAAGAGGGGAAATCAAAGCTACGCGCCGATCATTGGTGCATCCGCCAATTCCACTTCTTCCTCAACCCTTTCCGATGATTCGGCTGTTGATCTCTCTCGAGCTCTCAGGGGTTGGTCTGTGACTGCCAAGAGAGGCCGCAAAAGCCCTTCTTGCAGCAAATCAAATTCTGGTTTGGAAGATGATGATTATGAGATTGAGCCACGTATGCAAGAGGCCGCGAATCACCTCTTGTTGCTGGCCACTGGGCGTCCCAAGTGGGAGCAAGAGGTTGGTGCTGATCAGATTCAAGAACAGACATTGATCAAGATGGGGTATAAAGAGGAGTTGTTAAACCCAGTTTTGGGGAACTCTGATGAAATGAAGATCAAGAAGAGAAATAGAAAGAAAATGAAATTAACAGAATTAGCATCAGCTGAGGGGGGAAACAGGTTGGCTGCTAGATGCAGAAAATGCAACACAACCTTCAAAAGTCATCAAGCTTTGGAGGGTCATCTATGCAGCCATCAAAATTCTAAGAAAATTCAATCCAAGTCAGATGGTGTGTCAGCCACAAAAGTGGAGCGTCGTATCAAACCAACCATGCAAGGGGAGGAAACGGGAACTGCTCTCGAGGGTAGTGCTGTGGAAGCCATGAGAGGGTCTGACTGTAAAGTTCTCAACGAGACTTTCTCAACTGGTCAAGCCTTTGGGGACCACAAGAGATCTGACTGGACCAGCATGGCAGAAGCTCGGTCAGCTCAAGCAACATCATCACACGTGGAAAATGGTCAGAATTGTTCCAAGGTTTTGTGTTTTGATCTTAATCAGATTCCTGCTACGGATGAGGAAGAGGGTGTTCAATCAGACTTGTTTATTCCTGCCAATATTATGACATCATCCAGTTATGATTCCTCTTCCTAA 1257 0.4614 MEEDQEAQQQRENQGSVPGEGEGLEGNGGGVNNKEISPFTCQMCNKGFSSGKALGGHMRIHNISGKQVHKEKQGTSDVAKSKTTKWDLVDGNPTCTLCGKSFSSMKSLFGHMRSHTEKPKRGNQSYAPIIGASANSTSSSTLSDDSAVDLSRALRGWSVTAKRGRKSPSCSKSNSGLEDDDYEIEPRMQEAANHLLLLATGRPKWEQEVGADQIQEQTLIKMGYKEELLNPVLGNSDEMKIKKRNRKKMKLTELASAEGGNRLAARCRKCNTTFKSHQALEGHLCSHQNSKKIQSKSDGVSATKVERRIKPTMQGEETGTALEGSAVEAMRGSDCKVLNETFSTGQAFGDHKRSDWTSMAEARSAQATSSHVENGQNCSKVLCFDLNQIPATDEEEGVQSDLFIPANIMTSSSYDSSS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03671 418 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 218 395 IPR044653 GO:0003700
Spst3g03671 418 SUPERFAMILY beta-beta-alpha zinc fingers 38 115 IPR036236 -
Spst3g03671 418 Pfam C2H2-type zinc finger 39 61 - -
Spst3g03671 418 Pfam C2H2-type zinc finger 266 288 - -
Spst3g03671 418 Pfam C2H2-type zinc finger 95 116 - -
Spst3g03671 418 SMART c2h2final6 265 287 IPR013087 -
Spst3g03671 418 SMART c2h2final6 39 61 IPR013087 -
Spst3g03671 418 SMART c2h2final6 93 115 IPR013087 -
Spst3g03671 418 FunFam Zinc finger protein 93 116 - -
Spst3g03671 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Spst3g03671 418 Gene3D Classic Zinc Finger 28 91 - -
Spst3g03671 418 FunFam Zinc finger protein-like 38 62 - -
Spst3g03671 418 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Spst3g03671 418 Gene3D Classic Zinc Finger 94 122 - -
Spst3g03671 418 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Spst3g03671 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 61 IPR013087 -
Spst3g03671 418 MobiDBLite consensus disorder prediction 161 181 - -
Spst3g03671 418 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Spst3g03671 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 292 IPR013087 -
Spst3g03671 418 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03671 Spst-Chr3 86765975 86767231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03671 41 128 C2H2 Transcription Factor Family AT2G26940 37.273 1.34e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g03671 zf-C2H2_6 0.028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03671 - - vra:106765955 582.408