LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03669	ATGAGAACCCTCCGTGTGCTGCTCTTTCTGGGACTCTTGTGGGCTGAAATTCATGTCATTTCTTCAGACACTGAAACTCAAGACGTTGTTGCACTTAGATCATTAAAAGATGTATGGCAAAATACACCGCCCAGCTGGGACAAATCAGATGACCCCTGTGGAGCACCTTGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTGGGACTGTCAACCATGGGCCTGAAGGGGAAATTAAGTGGAGATATTGGTCAACTTACAGAATTGAGATCCTTGGATTTGTCATTTAATAGAGATTTAACAGGTCCTCTCTCTACAGAGTTAGGAAAGCTAAGCAAGCTAAATATTCTGATTTTGGCTGGTTGTGGCTTCAGTGGCAATATTCCTGATGAAATAGGAAATCTTTCAGAGCTATCTTTCCTGGCTTTAAACTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGTAAACTCTCCAAACTTTATTGGTTGGACTTGGCAGACAATCAGTTGACAGGGCCTATCCCAGTTTCAACCTCCACATCCCCTGGATTGGACCTTCTTTTAAAGGCTAAACACTTCCACTTCAATAAGAACCAGCTTTCAGGTTCCATACCCCCCAAGCTTTTCAGCTCTGACATGATACTCATACACATATTGTTTGATGGGAATAATTTAAGTGGGACTATACCCTCAACATTGGTACTAGTTAAGACCGTAGAGGTTCTACGGCTTGATAGGAATTTCCTGACAGGAGAGGTCCCATCAAATCTCAACAACCTTACAAACATCAATGACTTGAATTTAGCTCATAATAATTTCAAAGGTTCTTTGCCTAACTTAACTGGAATGGATACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAGTTTGGTTCACAACTCTTCCATCACTCACCACTCTTATTATGGAGTTTGGATCCCTACAAGGTCCTCTTCCATCCAAACTATTCGACATTCCTCAAATACAGCAAGTGAAACTGCGAAACAATGCATTGAACGATACATTGAGCATGGGTGAAAACATTTGTCCTCAATTGCAGCTTGTAGATTTGCAAAAAAATGAAATTTCCTCAGTCACACTCAGTGCACAATACAAAATTACATTGATTCTAATAGGTAACCCGGTGTGCAGTAGTCCTCTCTCAAATACAAATTACTGCCAACTTCAGCAACAGGCTAAGCAACCCTACTCCACAAGCTTGGCAAATTGTGGAGGCAAATCTTGTCCTCCCGATCAAAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATTTGAAGGAATGATGTACTTTAGAGGACCCACATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTTTGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTGCAAAACCCCTTCTTCAATAGTGATGACTATCTTCAAGTGCAACTAGCACTCTTTCCACCAACAGGGCAATTATTTAACAGGTCAGAAGTTCAAAGACTTGGGTTTGAATTGAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCCTATTATTTCATTGCATTTCCGTATCCTTTTTCAGGTTCTCACAAAGGAGCTTCTCTTAGCAAAGGTGTTATTATTGGGATAGCAATTGGCAGCACATTTCTGGTTCTTAGCCTCATAGGTTTAGCTATTTATGCAATTCTTCAAAAGAAGCGTGCAGAGAGAGCAATTGGATTAAGTAGACCATTTGCATCATGGGCACCGAGTGGTAAGGATAGTGGAGGTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGACGAGCTCAAAAAGTGCACCAACAATTTCTCTGAAAGCAATGAGATAGGCTTTGGAGGCTATGGCAAGGTGTACAAAGGTGTTCTTCCTGATGGGAAAATTGTTGCAATCAAACGAGCTCAGCAAGGATCTATGCAAGGAGGCCTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTCGTCGGCCTTGTGGGATTCTGCTTTGAACAAGGGGAACAGATGTTGGTGTACGAATTTATACCCAATGGAACACTTAGGGAGAGTTTGTCAGGAAGATCTGACATTCATCTTGACTGGAAGAGGAGACTCCGCATTGCTCTTGGTTCAGCCAGAGGACTTACATACTTACACGAACTTGCCAACCCTCCCATAATCCACAGAGATGTGAAGTCCTCTAATATCTTGCTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGCTTGTCCAAACTTGTATCGGACAGTGAGAAAGGCCATGTTTCCACTCAGGTTAAAGGGACATTGGGTTATCTGGACCCTGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTAGTGATGCTTGAACTAATAACTTCTAGACAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGTGCGCACGCTTATGAATAAGAATGATGAAGAACACTATGGTTTGAGGGAACTGATGGATCCAGTGGTGAGGAACACTCCAAACCTCATAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGGGTGAAGTTGTGAAAGCACTTGAAATCATTTTGCAGAATGATGGGATGAACACAAACTCTACTTCTGCATCCTCATCTGCCACTGACTTTGGAGTTTCTAAGGGTGGAATGAAGCATCCCTACATTGATGCTTCTTTTAATAAGAAGGACAATGTTAATGATAGTAGTAGTGCCTTTGACTACAGCGGAGGGTACACACTTTCAACAAAAGTCGAACCCAAGTAG	2901	0.4212	MRTLRVLLFLGLLWAEIHVISSDTETQDVVALRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGQLTELRSLDLSFNRDLTGPLSTELGKLSKLNILILAGCGFSGNIPDEIGNLSELSFLALNSNNFTGKIPPSLGKLSKLYWLDLADNQLTGPIPVSTSTSPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSDMILIHILFDGNNLSGTIPSTLVLVKTVEVLRLDRNFLTGEVPSNLNNLTNINDLNLAHNNFKGSLPNLTGMDTLNYVDLSNNSFDPSDAPVWFTTLPSLTTLIMEFGSLQGPLPSKLFDIPQIQQVKLRNNALNDTLSMGENICPQLQLVDLQKNEISSVTLSAQYKITLILIGNPVCSSPLSNTNYCQLQQQAKQPYSTSLANCGGKSCPPDQKLSPQSCECAYPFEGMMYFRGPTFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPTGQLFNRSEVQRLGFELSNQTYKPPKEFGPYYFIAFPYPFSGSHKGASLSKGVIIGIAIGSTFLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCTNNFSESNEIGFGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFIPNGTLRESLSGRSDIHLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKNDEEHYGLRELMDPVVRNTPNLIGFGRFLELAMQCVEESAADRPTMGEVVKALEIILQNDGMNTNSTSASSSATDFGVSKGGMKHPYIDASFNKKDNVNDSSSAFDYSGGYTLSTKVEPK	966

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g03669	966	ProSitePatterns	Protein kinases ATP-binding region signature.	635	657	IPR017441	GO:0005524
	Spst3g03669	966	Gene3D	Ribonuclease Inhibitor	285	404	IPR032675	-
	Spst3g03669	966	Gene3D	Ribonuclease Inhibitor	23	184	IPR032675	-
	Spst3g03669	966	SMART	serkin_6	629	902	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g03669	966	FunFam	Leucine-rich repeat family protein	27	184	-	-
	Spst3g03669	966	ProSiteProfiles	Protein kinase domain profile.	629	903	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g03669	966	Pfam	Protein tyrosine and serine/threonine kinase	632	899	IPR001245	GO:0004672\|GO:0006468
	Spst3g03669	966	Pfam	Leucine rich repeat N-terminal domain	27	63	IPR013210	-
	Spst3g03669	966	Gene3D	Ribonuclease Inhibitor	185	284	IPR032675	-
	Spst3g03669	966	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	705	916	-	-
	Spst3g03669	966	PANTHER	RECEPTOR-LIKE PROTEIN 55	33	903	-	-
	Spst3g03669	966	FunFam	Leucine-rich repeat protein kinase family protein	597	704	-	-
	Spst3g03669	966	Gene3D	Transferase(Phosphotransferase) domain 1	705	924	-	-
	Spst3g03669	966	Gene3D	Phosphorylase Kinase; domain 1	603	704	-	-
	Spst3g03669	966	SUPERFAMILY	Protein kinase-like (PK-like)	614	911	IPR011009	-
	Spst3g03669	966	SUPERFAMILY	L domain-like	35	408	-	-
	Spst3g03669	966	FunFam	Predicted protein	186	407	-	-
	Spst3g03669	966	CDD	STKc_IRAK	635	902	-	-
	Spst3g03669	966	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	749	761	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03669	Spst-Chr3	86747735	86753383	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g03669	6	966	Receptor kinase-like Gene Family	AT1G79620	70.981	0.0	1430

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Spst3g03669		PK_Tyr_Ser-Thr	8.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03669	-		-	gmx:100792249	1774.99