LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03656	ATGCAGGTTGAGGTGAGCAAGTACACTGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGATTACCCAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAGGGACCCAAAATCCATTATTAGTGATAGGAATGGTGATACTTCCTCCAAGCAAGAAGAGAAAGAGAAAATCAACTTTGATTTTGTATTGCCAAAGTCTGCTGATACTGGGAATACAAGCACACCTGGTAGACAACCTTCTCCACTTAACGTCCATCGCATGAGTTCTAGTCAGGATAAGAGCAGGACATCACAATCAGGACGGACTGCATTCAAGGGTTTTAAAGGAAAATCTCTGAGTGCTGCAGGGAGAGATGAAGAGAAGGCCATTGTTGAACCTGAGGTTTTGATGACCAAGGAAATAGATTGGTCTAACAATTGGGAGCACTCACTAAGAGAGAGGGACATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGAGGATAGAAAAGAACTTCGTGATTTCTGATCCTCGACTGCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACGGAGTATACACGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTAACAAGATAAGGGATGCTATAAGAGAACAGAGGGAAATCACTGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATATAGAACCCTTAAAAAACCGACTGTCAGAGACAGCTGAGCAACAGAGTGCAAAGTTGGTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCTGTCTTTCCACGACCTCACAAAAAGGAAAATCCTTCTTGGATAGCAATACAAAAGTTAGCTGAAAAGGCAAACGTAGGATCTTCAGAACTGTCTCCTGTAGTATACTTCTTACCTGAAGAAGTTGAACATTGGAATACAACTTGTGAGAAAGAGAATCACCAGCCAAAGCATTACAATTTGGCAAAAGCATTATTGGCACAAAATGGGAGGAAGAATGATGGTGTGAGGTGCATTTCCGCGACAAATGAGCAACCTTCCTCTGTCACAACACGACCCACGACCGTGCCGTGGGAAGGGAGTGAGACTGCCGGTGTGGAGATAAGAGAAACTAAAATGAGTGTGCTTAATGAAAGAAGCAGCCATTTATCTGGTTCTTGTCCTCACCATTTGTGTTGTATTGTAGCTGCAAGAGGCGAAAAAATTGGCCTCCAACATTTTGTGCCCATAAGGCCACTAGGTTGTGGTGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAAGCAATGGAAAAGTCTATCATGCTAAATCGTAATAAGGTTCACCGGTCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAGCACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTACTGACTTCTGCCAAGGGGGAGAGTTGTTTGCATTGCTTGACAGACAACCGATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTCTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTAATTCAGAAGGATGGTCATGTTGTATTAACTGATTTTGATCTATCATTTATGACATCGTGTAAACCCCAGATTGTGAAGCAATCAGTGCCTGGTAAAAGGAGATCACGAAGTGAACCGCGACCAATAATTGTTGCAGAGCCAGCTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTGCCCCTGAAATTATAACTGGAGCTGGGCATAGTAGCGCCATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAATTGATTAATGCACTATTGCAAAGAGACCCAACAAGTCGTCTAGGTTCAACCACTGGTGCAAATGAAATCAAACAACATCCCTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGACTCCACCGCCATTAGATGTTCCTCTAAAATTGATAGGAAAAGATCCAGTGGCAAAGAATATAAAGTGGGAAGATGATGGGTTGGATGGTGAGAACGAGAAAATGGAAAACAATTCAGAATAG	2382	0.4177	MQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVRDPKSIISDRNGDTSSKQEEKEKINFDFVLPKSADTGNTSTPGRQPSPLNVHRMSSSQDKSRTSQSGRTAFKGFKGKSLSAAGRDEEKAIVEPEVLMTKEIDWSNNWEHSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVNKIRDAIREQREITGELQYFIGVQLDGSDHIEPLKNRLSETAEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKENPSWIAIQKLAEKANVGSSELSPVVYFLPEEVEHWNTTCEKENHQPKHYNLAKALLAQNGRKNDGVRCISATNEQPSSVTTRPTTVPWEGSETAGVEIRETKMSVLNERSSHLSGSCPHHLCCIVAARGEKIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSIMLNRNKVHRSCIEREIISLLDHPFLPALYTSFQTSTHVCLITDFCQGGELFALLDRQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILIQKDGHVVLTDFDLSFMTSCKPQIVKQSVPGKRRSRSEPRPIIVAEPATQSNSFVGTEEYIAPEIITGAGHSSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRLGSTTGANEIKQHPFFRGINWPLIRNMTPPPLDVPLKLIGKDPVAKNIKWEDDGLDGENEKMENNSE	793

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g03656	793	SUPERFAMILY	Protein kinase-like (PK-like)	445	764	IPR011009	-
	Spst3g03656	793	SUPERFAMILY	PYP-like sensor domain (PAS domain)	185	248	IPR035965	-
	Spst3g03656	793	MobiDBLite	consensus disorder prediction	61	76	-	-
	Spst3g03656	793	ProSiteProfiles	Protein kinase domain profile.	456	742	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g03656	793	Pfam	Protein kinase domain	459	742	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g03656	793	Gene3D	PAS domain	156	245	-	-
	Spst3g03656	793	Gene3D	PAS domain	246	293	-	-
	Spst3g03656	793	ProSiteProfiles	PAS repeat profile.	166	239	IPR000014	-
	Spst3g03656	793	Pfam	PAS domain	189	248	IPR000014	-
	Spst3g03656	793	MobiDBLite	consensus disorder prediction	80	118	-	-

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03656	Spst-Chr3	86580501	86603351	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g03656	444	781	AGC Kinase Gene Family	AT5G58140	82.006	0.0	608

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Spst3g03656		Pkinase	2.4e-61	CL0016

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03656	K20715		-	cit:102626333	827.394

Showing 1 to 1 of 1 entries