Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst3g03655 | ATGGAGAAACTGAAAGTATCTGTTAAGCATGATTCTGATGGCAGCAGTGATCAGGCAGATTCATTTCCAATATTCCAATTGCGCGAGAGTGAAAATGTTGGACAGCAGAGGATCGGAAGAGAGGATGATGATACAAAAGCTGTGAGATTGGATGGGGGTTCGGCAATTGCCTCCACTAATTCTGCAAGCAACAAGTGGATGGCATTTGCTAGTAAACCTGGTTTTGCAACTGATGGCAACTCAGCAATAAAGGATAACAGTAAAACTAAAGACAATTACTTGAGGAATCATCTAAAAGAGAAGTCCTCGTCTGATCAACAAATTTTAACTGAAGCAACCATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGGTGAACTCTGGGAACTTCAAAGTAATGGGAGGAGAAAATACTGGCGCCTCTTTCGATGGTGACAGAATTAGAAACTTGTCAGATAGATTTGGTGAATCAGCACGGACTTCTGGTGAGTCAAATTTTGGATCTGAGTCATCATCAGGGGTGTTCCCAAGGGTTTCACAAGAGTTGAAGGAAGCACTGGGGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATCATGTATGCCAGCAGTGGCTTTTTCACTATGACTGGCTACTCTTCAAAGGAGATTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGAGACAGACAAGAATGAAGTGGAGAAAATTCGGGATGCAATTAAAAATGGGAGAAGTTATTGTGGCAGACTATTAAACTACAAGAAAGATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATCGGGACACCTGTGGGAGGAGGTGTGCTAAAGATGTGA | 900 | 0.4311 | MEKLKVSVKHDSDGSSDQADSFPIFQLRESENVGQQRIGREDDDTKAVRLDGGSAIASTNSASNKWMAFASKPGFATDGNSAIKDNSKTKDNYLRNHLKEKSSSDQQILTEATIAERTAEWGLVVNSGNFKVMGGENTGASFDGDRIRNLSDRFGESARTSGESNFGSESSSGVFPRVSQELKEALGTLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETDKNEVEKIRDAIKNGRSYCGRLLNYKKDGTPFWNLLTVTPIKDDHGNTIKFIGTPVGGGVLKM | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst3g03655 | 299 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 199 | 290 | IPR035965 | - | |
| Spst3g03655 | 299 | Gene3D | PAS domain | 192 | 293 | - | - | |
| Spst3g03655 | 299 | FunFam | Ptaureo1a lov2 domain | 181 | 295 | - | - | |
| Spst3g03655 | 299 | CDD | PAS | 205 | 290 | IPR000014 | - | |
| Spst3g03655 | 299 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Spst3g03655 | 299 | ProSiteProfiles | PAS repeat profile. | 178 | 251 | IPR000014 | - | |
| Spst3g03655 | 299 | NCBIfam | PAS domain S-box protein | 205 | 289 | IPR000014 | - | |
| Spst3g03655 | 299 | ProSiteProfiles | PAC domain profile. | 252 | 299 | IPR000700 | - | |
| Spst3g03655 | 299 | Pfam | PAS domain | 199 | 290 | IPR000014 | - | |
| Spst3g03655 | 299 | PANTHER | PROTEIN TWIN LOV 1 | 76 | 289 | - | - | |
| Spst3g03655 | 299 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst3g03655 | Spst-Chr3 | 86574924 | 86576341 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst3g03655 | 181 | 294 | AGC Kinase Gene Family | AT5G58140 | 48.246 | 6.17e-32 | 123 |