Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03635 ATGGAGAATGGTCAACCAATGTTGGATGGGAGAGTGGGAAACATACTAATCGCCATGGGTTCAGCGAGTTTCGTCATCACAATATTCCATCTTATCATCCTCTGCCGCACCCATCATCGCGTTCCTCGCACCAACCAAAATCCACAACAACAGCAACAGCCACGCAACGTTAACATTTCGGTGCTGCCACATCTCATTCCGATCCACACGTACCAAAAGAAGAAGAAGATAAACGATGATGGGGTGGCAGCGGAGGGCGACGACGACGAAGATGCCACGTGCGCCGTGTGCTTGGGGGAGTTCGAAGAGGGTGAAGAGTTGAGGACGTTGCCGGAGTGCATGCACTCTTTCCACGTGACCTGCATTGATACGTGGCTCTCTTCCCACCCCAGTTGCCCGGTTTGCCGTGCGCATGCCACACCATCGCCGGCAGTGGAGCACCCTTCGCCGGAGCTTGGTTCTGCGCTTATTGCTCATCACAGCATAGATATCACGCAGCTAGCCCGCCTTCAAAATGGCTCAGTCCCACGCTGA 534 0.5431 MENGQPMLDGRVGNILIAMGSASFVITIFHLIILCRTHHRVPRTNQNPQQQQQPRNVNISVLPHLIPIHTYQKKKKINDDGVAAEGDDDEDATCAVCLGEFEEGEELRTLPECMHSFHVTCIDTWLSSHPSCPVCRAHATPSPAVEHPSPELGSALIAHHSIDITQLARLQNGSVPR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03635 177 SUPERFAMILY RING/U-box 86 142 - -
Spst3g03635 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Spst3g03635 177 SMART ring_2 94 135 IPR001841 -
Spst3g03635 177 Pfam Ring finger domain 93 136 IPR001841 -
Spst3g03635 177 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Spst3g03635 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 141 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03635 Spst-Chr3 86383361 86383894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03635 36 150 C3H Transcription Factor Family AT3G10910 39.831 3.54e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03635 - - vra:106765957 248.825