Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03625 ATGGCCTACGAAATGAATTTGAATCTCAAAATCGTGGCAGAGGAAACTGTCTTCTCACCACAGTTTACGAAACAAAACAAACACTTTCTTAGGAAAAAAGCCTCATCCTTTTTCCGCAACAAGCTCAGATACCAATGCAAGTTTAGTTTTACCTCTGTAGATCTGACCCATGTGGGAATCTCAAAAAAAGAAAGCATTTTGAATTCTGGGGTTTTGTTTTGGTATATTGGTCACTGGACAAGTGGAGAGATTGCTGTTGGGGTCATGGGTTCCAATGGTAGCAAAGCCACTTATTCGTCTTCTTCGGGGAGTTTAAGGAAGGCTCCATCTAAGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAAATACCTCTGGTTCTCACGAGAGTGATGATGAAGACCAGGTTTGTGATCAGAGTAAAGTAAATGGCAGTGATGTTACATATGCTGGTGGCAATGTAACAAATTCAGATGAGGTGAAAACAGAGTCATTTAGAAAGGTTAAAGCTAGTGGAATAACTTGTATGCCTTCTAACATTGATCTTCATGAATGGAAAGAAACAAACGTCCCCAACACTTCATCCAGTACTGCTAGCAGCTCTAGTATTCATGATTCTTCAACACGTTCCTTGAACCCTACAAGTCATTTCCTTTCTCAGTTTAGCCTCATTCCTGGTAATGTAAGCTTTAGATTTAGCCGAACCACCAGTTTGGGGTCATCACGGCCTTGTCCTGTTTCTTCTGCAAGTCTTTCAATATTTGACAATGAAGACGAGCGTAATCTCCATTCCAGATCTCCTGAAAGTTTGATTAACAGAAATGAAGCACAACAATGTAATACCCTGCTTCCTGCGTCCTTTTCCAATCAAATACATGCACAATGTCATGAACATTCTTCTAATAATTTAAGGTCGAATGTTCCAACATCAGGTACACTTGGAAACTTACAGAGAAATCCCACAGATGGAGTTCACACTAGAGAAGGGCTAGATGTGAGCTTATTTTCTCCAAGAATTCAAACAGAGACAGAAATTGTTGACACTAGACATATCAATCCCCGAAATGGTGCCCGAGAATCAGTTGAACAGAATGTTCATTTTAGCCGAACATTTAGTGTTGGAAGGCTTCGAGACAGAGTTCTTCGTCGATCAACATTTTCTGACCTCACCTTTTGGCCTCTGCCACAGGGGAGAGAGCTGAGAGATGCTACCCTGCCTAGCCAGGATAGTGACAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTAATCTTAGTACCATTGATTCTTCTACATCTAGTGTGTCTAGCTCCATGTTTAGTATCCGAGACTACGAGGTGGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTCCTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGCACTCTTCAGCGGTTGGGTAATCGCTTTGAAAATCTTTCTGGACATGATAGATCGTGTATCTTGTCTGGTCAACATAGAAGTGGTCGTTGTACATGCCAAATCAATAATCGTGAAACTAATTCAAATGATGGTACCGGTGCTAGAGCTAGCATATCAAGGATTATTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAACAATCTGTTGTTTTATCTTCCCGCCCATCTGAATCTTCTATTGGATCCGTTCCTGCACCGAAGTATGTCGTTGATTCCTTGCCTGTCAAGTCATATGAGAAGTTGCACAAGCATCAAGAGGATGGTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGCGAGTACTGCCGTGCCATCACGAATTTCATAGAACATGTATAGATAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTAGAGGGGACATATGCATATCCGATTCAACACCAGCAACAGAGAACTGGAGTGGCTAG 1965 0.4219 MAYEMNLNLKIVAEETVFSPQFTKQNKHFLRKKASSFFRNKLRYQCKFSFTSVDLTHVGISKKESILNSGVLFWYIGHWTSGEIAVGVMGSNGSKATYSSSSGSLRKAPSKGLRVFQSYCLGNTSGSHESDDEDQVCDQSKVNGSDVTYAGGNVTNSDEVKTESFRKVKASGITCMPSNIDLHEWKETNVPNTSSSTASSSSIHDSSTRSLNPTSHFLSQFSLIPGNVSFRFSRTTSLGSSRPCPVSSASLSIFDNEDERNLHSRSPESLINRNEAQQCNTLLPASFSNQIHAQCHEHSSNNLRSNVPTSGTLGNLQRNPTDGVHTREGLDVSLFSPRIQTETEIVDTRHINPRNGARESVEQNVHFSRTFSVGRLRDRVLRRSTFSDLTFWPLPQGRELRDATLPSQDSDRQAVEGDSRVSPSNLSTIDSSTSSVSSSMFSIRDYEVETSRLREGRYQDLLEHRSNFLERRRRIRSQVRTLQRLGNRFENLSGHDRSCILSGQHRSGRCTCQINNRETNSNDGTGARASISRIIMLAEALFEVLDEIHQQSVVLSSRPSESSIGSVPAPKYVVDSLPVKSYEKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPATENWSG 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03625 654 SUPERFAMILY RING/U-box 573 644 - -
Spst3g03625 654 Pfam Ring finger domain 594 637 IPR001841 -
Spst3g03625 654 FunFam Putative RING zinc finger domain superfamily protein 564 642 - -
Spst3g03625 654 SMART ring_2 595 636 IPR001841 -
Spst3g03625 654 MobiDBLite consensus disorder prediction 402 434 - -
Spst3g03625 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 641 IPR013083 -
Spst3g03625 654 MobiDBLite consensus disorder prediction 299 322 - -
Spst3g03625 654 MobiDBLite consensus disorder prediction 407 434 - -
Spst3g03625 654 ProSiteProfiles Zinc finger RING-type profile. 595 637 IPR001841 -
Spst3g03625 654 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 89 648 - -
Spst3g03625 654 MobiDBLite consensus disorder prediction 186 209 - -
Spst3g03625 654 MobiDBLite consensus disorder prediction 299 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03625 Spst-Chr3 86306734 86310477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03625 302 650 C3H Transcription Factor Family AT5G45290 58.011 7.86e-112 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03625 - - gmx:100800896 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03625 3 86306734 86310477 Spst3g03625 3 86306734 86310477 ECH