Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03623 ATGCAGTCATTGACTTTAAACACGAACAAACTTTCAGGGGAAATTCCATCATCCATTGGCAACCTTAGTATGTTGTTTCAACTTGACTTGTCAGATAACATTCTGGAAGGAACCATTCCTCCTAGTCTTGGAAATTGCCAAATTTTACAGTTTCTTGATCTTTCACATAACAGACTTACTGGAACTATTCCTTTTCAGGTCATTGGCCTTCCCTCCTTGTCATTGTTATTGAACTTGTCCCACAACTCATTAAATGGCAGCCTACCCGTTGAAGTGGGCAACATGAAAAGCATCAACAAGTTGGATGTTTCAAAAAATTCACTCTCTGGTGAAAATCCTTCAACTATTGCACAGTGCATAAGCTTGGAATTCCTTAATTTACATGGGAATTTCTTCCGGGGAGCCATACCTTCTTCCTTGGCTTCATTGAAAGGCCTTCAGTATTTAGATTTGCCACAAAATAACTTGTCTGGATCAATTCCAGAAGGTTTAGAGCGTATTCGTGATCTGCAGTACTTGAATATTTCCTTTAACAGGTTGACTGGTGAAGTACCAACAGAAGGTGTCTTTAGAAATGCAATTGTCATGTCAATAAAAGGAAACAGTGACCTTTGTGGCGGTATCTCAGGGCTACACCTACCACCATGCCAAGTCAAAGTTATGACACAGAAAAAAACAGTTGCTTTCTATTGGAAAAACACAAATAGGAGAACATCTAGTTCACAAACAACATTGGACCCTCTTGCCAAGGTCTCATACACGACACTCCACCAAGCAACAAATGGATTCTCTTCCGATAACTTAATAGGATCTGAAGGTTTTGGCTCTGTTTATAAAGGAACTATTGAGGCGGAAGAGAGAGATGTCGCTATAAAGGTCCTGAATCTTAAAAAGAAAAATATTCGCCACAGAAACCTGGTCAAGATTATAACGTGCTGCTCGAGCATGGATTATAGTGGATATGAATTCAAAGCTCTAGTCTTTGACTACATGGAAAATGGAAGTTTAGACAAATGGTTGCATTCTGCGTCAGAAATTGGAGATCGACCAACTTTGGACTTTTCTCAAAGGCTAAATATTCTTATAGAAATTGGTTGTGCTTTACATTATCTTCATTATGAATGTGCACAACAAATAGTTCACTGTGATTTAAAGCCAAACAATGTTCTTCTTGACAATGATATGGTTGCTCATGTAAGTAATTTTGGACTGGCAAGACTTACCTATACCATCAATGGTGTCTCTCATCTTCAATTTAGCACAATCGGAATCAAGGGAACGGTTGGATACGCTCCTCCAGAATATGGAATGGGAGGTGAAGTATCAACACAGGGTGAGGTGTATAGCTTTGGAATCCTTGTACTGGAGATGCTAACAGGAAGGAAACCCACAGACGAAATGTTTATAAATGGAATCAATCTCCATAATTTTGTCAAAGTTTCGTTGCCAGATAAGCTCCTACATTTAGTGGACTCGGCCATTCTCCGAAGAGAATTGAAACAAACAGTTGTATCAGCAGAAATGGAAAACTACAGTGATCAGAACATGAGGCAAATGCTTCCTAATGATATGAACAAATGCTTACTTGAACTGTTTACCATAGGACTGGCTTGTTCAGCAGAGTCACCAAAAGAAAGAATGAAAATGAGGGATGTCATCAGGGAACTGCATCTAATCAGAAATGCTCTTCTTGGAAATTGA 1701 0.3904 MQSLTLNTNKLSGEIPSSIGNLSMLFQLDLSDNILEGTIPPSLGNCQILQFLDLSHNRLTGTIPFQVIGLPSLSLLLNLSHNSLNGSLPVEVGNMKSINKLDVSKNSLSGENPSTIAQCISLEFLNLHGNFFRGAIPSSLASLKGLQYLDLPQNNLSGSIPEGLERIRDLQYLNISFNRLTGEVPTEGVFRNAIVMSIKGNSDLCGGISGLHLPPCQVKVMTQKKTVAFYWKNTNRRTSSSQTTLDPLAKVSYTTLHQATNGFSSDNLIGSEGFGSVYKGTIEAEERDVAIKVLNLKKKNIRHRNLVKIITCCSSMDYSGYEFKALVFDYMENGSLDKWLHSASEIGDRPTLDFSQRLNILIEIGCALHYLHYECAQQIVHCDLKPNNVLLDNDMVAHVSNFGLARLTYTINGVSHLQFSTIGIKGTVGYAPPEYGMGGEVSTQGEVYSFGILVLEMLTGRKPTDEMFINGINLHNFVKVSLPDKLLHLVDSAILRRELKQTVVSAEMENYSDQNMRQMLPNDMNKCLLELFTIGLACSAESPKERMKMRDVIRELHLIRNALLGN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03623 566 PANTHER OS04G0122200 PROTEIN 1 560 - -
Spst3g03623 566 Pfam Leucine Rich Repeat 28 46 IPR001611 GO:0005515
Spst3g03623 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Spst3g03623 566 Pfam Protein tyrosine and serine/threonine kinase 267 556 IPR001245 GO:0004672|GO:0006468
Spst3g03623 566 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 89 213 - -
Spst3g03623 566 SMART serkin_6 263 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03623 566 ProSiteProfiles Protein kinase domain profile. 263 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03623 566 Gene3D Phosphorylase Kinase; domain 1 224 330 - -
Spst3g03623 566 SUPERFAMILY Protein kinase-like (PK-like) 236 558 IPR011009 -
Spst3g03623 566 FunFam LRR receptor-like serine/threonine-protein kinase 1 71 - -
Spst3g03623 566 PRINTS Leucine-rich repeat signature 143 156 - -
Spst3g03623 566 PRINTS Leucine-rich repeat signature 49 62 - -
Spst3g03623 566 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Spst3g03623 566 Gene3D Ribonuclease Inhibitor 1 223 IPR032675 -
Spst3g03623 566 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 331 566 - -
Spst3g03623 566 SUPERFAMILY L domain-like 2 206 - -
Spst3g03623 566 Gene3D Transferase(Phosphotransferase) domain 1 331 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03623 Spst-Chr3 86301667 86303770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03623 1 560 Receptor kinase-like Gene Family AT3G47570 43.627 4.34e-157 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst3g03623 PK_Tyr_Ser-Thr 9.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03623 - - qsa:O6P43_025027 693.345