LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03613	ATGGAACTCAGCACTGCCTTCTGCTTGTCTGCTGCTTTCCTATCCATTCTTCTCTTCAAATCACTCGTCAAATTATTCTTCTTCTCGTTCCCTTCCAAAGGGAACAGACAATTGCCACTTCCTCCAGGAACCATGGGTTGGCCTTACATAGGAGAAACTTTTCAAATGTATTCTCAAGACCCAAATGTTTTCTTTGCCACAAAAATCAACAGGTTCAAAACAATTCCTTTCTCACTCTCATCAACCCTGTCAATCTTGTTCAAGAAAATGGTCACTTGCATTAGCATATGTACATCTACTGTTCGGTATGGCTCTATGTTTAAGTCACACATTTTGGGTTATCCTTGTGTGATGATCTCTAACCCGGAAGCTGCAAAGTTTGTGCTGAACAAAGCTCAACTCTTCAAACCAACATTTCCTGCTAGCAAAGAGAGGATGTTGGGGAAGCAAGGAATTTTCTTTCACCAAGGAGCATACCATGCTAACCTCAGAAGGCTTGTCCTTCGCACCTTCAAGACTGAGGCCATCAAAGATATAGTCTCTGACATTGAATCCATTGCCCTAAGTTGCCTCAACTCATGGGAAGGAAAGCTGATCACAACTTTTCTTGAAATGAAAAGTTATACCTTCAATGTGGCCCTGCTTTCAATTTTTGGAAAAGATGAAAATCTGAATGAAGAGGGTCTGAAGCGATGCTACTACACCCTCGAGAGAGGGTACAACTCAATGCCTATAAACCTTCCAGGAACACTTTTCCACAAGGCCATGAAGGCAAGAAAAGAGCTTGCCCAGATCTTGGCCCAAATCATCTCAACAAGGAGGAAGATGAAGCAAGAACACAATGACTTGATGGGCTCGTTCATGAGTGAAAAAGCAGGACTCACTGATGAACAGATAACAGATAACATCATTGGTGTCATTTTTGCTGCTCGTGACACCACTGCCACAGTACTTACATGGATTATTAAGTACCTCGGCGAAAACCAGAGTGTCTTAGAAGCAGTAACAGAGGAGCAGGGGTCCATTTTAAGGGGTAAGGAAGAAAATGGGGAAGAAATGGATCTGAATTGGTCAGACACAAAAAATATGCCTGTGACATCAAGAGTTATTCAGGAGACTCTAAGAATAGCATCAATTTTGTCTTTTACTTTCAGAGAAGCGATAGAAGATGTTGAATTTCAAGGGTATCTCATACCAAAAGGGTGGAAAGTACTACCACTTTTCAGAAACATCCACCACAGTCCTGACAATTTCAAAGAGCCAGAGAAGTTTGATCCTTCAAGATTTGAGGTGACTCCAAAGCCTGATACTTTTATGCCATTTGGCAATGGGACCCATGCATGTCCTGGCAATGAATTAGCAAAGTTAGAGATTTTGGTGCTTCTACATCACCTGACCACAAAATACAGTTGGTGTATTAAAGATGCAAAAAATGGAATTCAGTATGGTCCTTTTGCCCTTCCACAAGATGGATTGCCCATTACAATATATCCCAAACACAATTATCATTCAAATAAAACGTGGAGGCCTACTAACAATTGA	1542	0.4125	MELSTAFCLSAAFLSILLFKSLVKLFFFSFPSKGNRQLPLPPGTMGWPYIGETFQMYSQDPNVFFATKINRFKTIPFSLSSTLSILFKKMVTCISICTSTVRYGSMFKSHILGYPCVMISNPEAAKFVLNKAQLFKPTFPASKERMLGKQGIFFHQGAYHANLRRLVLRTFKTEAIKDIVSDIESIALSCLNSWEGKLITTFLEMKSYTFNVALLSIFGKDENLNEEGLKRCYYTLERGYNSMPINLPGTLFHKAMKARKELAQILAQIISTRRKMKQEHNDLMGSFMSEKAGLTDEQITDNIIGVIFAARDTTATVLTWIIKYLGENQSVLEAVTEEQGSILRGKEENGEEMDLNWSDTKNMPVTSRVIQETLRIASILSFTFREAIEDVEFQGYLIPKGWKVLPLFRNIHHSPDNFKEPEKFDPSRFEVTPKPDTFMPFGNGTHACPGNELAKLEILVLLHHLTTKYSWCIKDAKNGIQYGPFALPQDGLPITIYPKHNYHSNKTWRPTNN	513

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst3g03613	513	PRINTS	P450 superfamily signature	448	459	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst3g03613	513	PRINTS	P450 superfamily signature	439	448	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst3g03613	513	PRINTS	P450 superfamily signature	309	326	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst3g03613	513	PRINTS	P450 superfamily signature	368	379	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst3g03613	513	PANTHER	CYTOCHROME P450 26	37	472	-	-
Spst3g03613	513	SUPERFAMILY	Cytochrome P450	36	498	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst3g03613	513	Pfam	Cytochrome P450	102	474	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst3g03613	513	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	441	450	IPR017972	GO:0005506\|GO:0016705
Spst3g03613	513	FunFam	Abscisic acid 8	81	498	-	-
Spst3g03613	513	PRINTS	E-class P450 group I signature	318	344	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03613	Spst-Chr3	86195247	86197810	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g03613	9	494	Cytochrome P450	AT4G19230	64.837	0.0	634

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03613	K09843		-	gmx:100807446	787.334

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g03613	3	86195247	86197810	Spst3g03613	3	86195247	86197810	ECH
	Spst2g01062	2	9352243	9354539	Spst3g03613	3	86195247	86197810	PCT

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