Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03592 ATGATCCACTTGTTCTTGTCGGAGCCCAATTGGAACGACGTCGTAGACGACGACGACGATTCAACTCGATCGAGAATGTCCATTCTGAGCGACTTGGAAACCGTTATTTGGTCCGCGCTAGGTCGCGCCGAAGCGCGTTTATGGCTCTGCAACACCGTCGCGGGTTTCAACTGCGTAACTTTCCTCGATCAGCGTGAACTGTTTCGGGCTTTGCTCAGAACCCGAGGGATGAAGCGCGATTTGGCGTCTCAACTTCTGCATTTCATGTTCGACACCTCGCCGCACAAACTCGGTTCCGTTTTGGCTCAGAGGAGTCACGTGCTGGAGGTCTTTTTTCAAGGTAATCCTAAGCGAGTGTTGCAGTGGTTTTCCTGCACTTCCTCTGGCGGGGGGCTAGTGCAGGGGAAAGGTTTCAGGGCACTGTCTCAGTTTGCATTTAAAAATAGGGATATTTGTTGGGAGGAGCTGGAGTGGAAAGGAAAGCATGGGCAGTCACCAGCAGTGGTTGCTACTAAGCCCCATTATTTTCTGGATTTGGATATTCAGCGAACTGTAGAAAACTTTTTGGAACATGTGCCCGAGTTTTGGTCATCTGATGAGTTTGCTGAGTCAATGGAGGATGGTGATATTTTTTTCATTGATAGGTCATTCTTTGTGCAATATTTCATTGATTTAATGTATAAGGAGGAATTTAAAGACATCTGGGATGTTGTAAATGAATTCCTCATGAGGCAGCCCTTCTCCTCTTTGTGTGGGCGACTTCTCATTGCTCTTGAAGATCAAGACTTATGCTACTTTGTGGAAGCACTTTGTAAATCTCTTGGCCCAAGAATGGAACTTCAAGATATCAATGACATCTCTAATTTGTTTGTGATTTTAGTTTTTAAATGTGGTGCTTATGGATCTATTGACCAGTTATTGCTGCTAAATGCTGTCACTGCACAGGGGAGGCAGCTTCTACGTCTTTTACATGATGAAGAGGCTTCGGAGCCACAAGGAAAAATCAATGAAATTGTGTCAAAGATGTCTGCAATCCCAAGCAATCCTAATAGCTTGACCCCAATCTTCAAGAACAAATGTAAGATGAAGATTATAGAAGTCATAAAGTATCTGGGACTTCTGTCATGGCTTCTTTACTATAGACTGTCACAAGAATGCCAGACCCCTGAGTCTTGGGAGTCTTTGTTTATGAATAATCAAATTGGTTTCCGTAACTTTAATAAACATGCATTGATAGAAGAGGATCGACCATCAGAAGAAGATTGTTCTGGTTTTGATAGCAGTTCTTCAGTTAGAGTAAAAAGTAGGAGAAAAAAGAAGGCTAGAAAGAAGAGGAGGACCTATTATAACAATGAAGATAGTGATGATGATGAGCTGCTAGATTATGATTCTGCTAGCCATAAATTAGTTTCTCTGTCAAATACTAGAAGTTGGTTGCTGTCAACTGATGGTTACTCTTCAGGATTGAGCAGTGTGGATGACATTGCTTTTTGGAAAATGAAGTCTTGCTCTGCTTCTTTGGATCCACCAAAGAGACATGCCATCATCATCTCCAAACTGTTGGGTGGCAAGATCATTCATACGTCGTCTGGATTCTTACAGAATATACTGGACTTGCTGAGATGGGAAATATCTGAAACGCAACTTGCGTTTCCGTATCATGAGCTTTTCAAGAAAGTGCTTGTACGCGCAGAGCGCACGCGCTGCCTTTCTATCAAAGGGAGAACCCTCCGTACCCACTTTTATTCCGAAGTTTCAACGTGGGATTATCCAAAGAAACTTTTGAGGCCTTCAGACCAAGTTGTTCTCTTCATCGACCAACATAATCCTAAACCAACCTCCATGGAAGCAGAAAATTATCAAGAGAAACCCAAGCACCCCTTAAACGTCAGAACTCTCAACCGTCTCAACTTCTCAAAACCCAAATCCCGAATCCAAGAGTACAACTATGTTCCCCGCAACAAACTTGCAAACTCTGAAGAAGGTGACATTATCCAACCCACCTATAAGCTCACTTCCAATGACGAAGACGACGACGACGACGACGACGATGACCGGAAATGGGACAAGGAGGAGATGGAGGAGGATGGCTCAGAGCATGGCCCAAAGTTGCACCAGAAGAGGAATTTCAAAATCAAGTGGAGACTCATCATGGAGTGGGTTTTGTTTCTCAATATATTGGCATGCTTGGTGTGTTCTTTGACCATATCTTCCATAACCAACATGCACGTGTTGGGATTGGAGATTTGGAGGTGGTGTTTGATGGCAATGGTTACATTCAGTGGTCGTCTATTTTCAGGGTGGCTAGTTGGTGTCATAGTTTTCGTCCTTGAACGAAACTTCATGCTAAGGGAGAAGGTGTTGTACTTCATCTACGGGCTTAGGAATAGCATAAGAAACTGTTTGTGGTTAGGCCTGGTGTTACTCTCCTATTGGAGCTTGGTATTCGACGATGTCCAAAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCGGTTCTGGTGGGCGCAACCATTTGGCTGGTGAAGATCGTGCTGGTGAAGATGCTGGCATCCTCGTTCCACGTGACCACATACTTTGACAGAATGAAGGAGAGTGTTTTCCACCACTACATTCTGGATACGTTGTCGGGTCCACCCATGGAGGACGCTGAGGAGATATTGCGGCAGCACCACCTTACGGGGTCCAAGTCCATGCCTGCGAGGTTGAAGATGAAGGAGGCAAAGAACTTGTACAAGTCCACGAGATTTGGGTCGAGGAGGATCGACATGGAGAAGTTGAGAGAGCTAAGCATGGAGAGCACTGCGTCTGCATGGAGTGTGAAGAGGCTTGTTAACTATGTCAGATCTTCGGGCTTGTCTACCATTTCCAGGACTGTGGATGATTTTGGCAATGCTGAGTCTGAGATCAGTAGCGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAATGTTGCAAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTTATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGAGCTCTTGAAACGGGACAGATCAGCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAATCACTGAATGATACGAAAACAGCAGTGCAACAGCTTCACAAAATAGCAAGCGCAGTTGTTAGTGTGATAATAATCATTGTGATGCTTTTGGTGATGGAGGTGGCCACCCTCAAGATAATATTATTCTGCATCACACAAACAGTTCTCATAGGTGTTGCCTTCCAAAGTACCTGCAAGACTGTTTTGGAGGCCATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGTTGCGTCATTGATGGAGTTCATATGATCGTGGAAGAGATGAACATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAATTCAGTTTTGCTCTCTAAGCCTATAAGCAACTTCTATAGGAGTCCAGAGATGGGGGATGCTGTCGACTTCACCATTGATGTTTCAACTTCCATGGATACCATTCTTGCCCTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCCAAGTATTGGAATCCAAAACACAGTTTGATAGCCAAAGGAATTGATAATATGGACAAGCTAAAGTTGGCCTTATGTGTGCAACATACTATCAACCATCAGAACTACGGTGAGAGAAATATTAGGATGACAGAGCTTCTCTTGGAACTGAAGAGGATCTTTGAGATCCATGATCTCAAGTACCATCTTCTTCCTCAGGAGATTCAGATCACCCGTATGAATATTGAACATGGCAAAGATCTGTTTCAATCATGA 3882 0.4371 MIHLFLSEPNWNDVVDDDDDSTRSRMSILSDLETVIWSALGRAEARLWLCNTVAGFNCVTFLDQRELFRALLRTRGMKRDLASQLLHFMFDTSPHKLGSVLAQRSHVLEVFFQGNPKRVLQWFSCTSSGGGLVQGKGFRALSQFAFKNRDICWEELEWKGKHGQSPAVVATKPHYFLDLDIQRTVENFLEHVPEFWSSDEFAESMEDGDIFFIDRSFFVQYFIDLMYKEEFKDIWDVVNEFLMRQPFSSLCGRLLIALEDQDLCYFVEALCKSLGPRMELQDINDISNLFVILVFKCGAYGSIDQLLLLNAVTAQGRQLLRLLHDEEASEPQGKINEIVSKMSAIPSNPNSLTPIFKNKCKMKIIEVIKYLGLLSWLLYYRLSQECQTPESWESLFMNNQIGFRNFNKHALIEEDRPSEEDCSGFDSSSSVRVKSRRKKKARKKRRTYYNNEDSDDDELLDYDSASHKLVSLSNTRSWLLSTDGYSSGLSSVDDIAFWKMKSCSASLDPPKRHAIIISKLLGGKIIHTSSGFLQNILDLLRWEISETQLAFPYHELFKKVLVRAERTRCLSIKGRTLRTHFYSEVSTWDYPKKLLRPSDQVVLFIDQHNPKPTSMEAENYQEKPKHPLNVRTLNRLNFSKPKSRIQEYNYVPRNKLANSEEGDIIQPTYKLTSNDEDDDDDDDDDRKWDKEEMEEDGSEHGPKLHQKRNFKIKWRLIMEWVLFLNILACLVCSLTISSITNMHVLGLEIWRWCLMAMVTFSGRLFSGWLVGVIVFVLERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILRQHHLTGSKSMPARLKMKEAKNLYKSTRFGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQSTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNSVLLSKPISNFYRSPEMGDAVDFTIDVSTSMDTILALKKSIQMYIESKPKYWNPKHSLIAKGIDNMDKLKLALCVQHTINHQNYGERNIRMTELLLELKRIFEIHDLKYHLLPQEIQITRMNIEHGKDLFQS 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03592 1293 Gene3D - 1123 1172 IPR023408 -
Spst3g03592 1293 MobiDBLite consensus disorder prediction 667 703 - -
Spst3g03592 1293 Pfam Mechanosensitive ion channel 1064 1269 IPR006685 GO:0016020|GO:0055085
Spst3g03592 1293 FunFam Predicted mechanosensitive ion channel 1123 1172 - -
Spst3g03592 1293 SUPERFAMILY Sm-like ribonucleoproteins 1114 1172 IPR010920 -
Spst3g03592 1293 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 628 1282 IPR016688 -
Spst3g03592 1293 MobiDBLite consensus disorder prediction 674 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03592 Spst-Chr3 85939785 85950918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03592 597 1283 Mechanosensitive Ion Channel Family AT5G12080 42.472 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03592 K22048 - gmx:100813521 1216.83