Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03588 ATGGAGTCTGACGAGAACGAACCTGTGACGACTCGCGAGATCCGAGCGAATGGAAATTGCGTCAAACTGTCAGAGGTTGAGGCCGAGGTTGATGCAGGAAATGTTGAAGGAGCAGAAACAACATTGCGTGACGGGTTGTCTCTAACTTCCGAGACTGATCCCAGTTCTCAACCTACCATTGCAATATGTACTACCTTAAAGTCAGAAGGATCCTCGTCATCGAAGGAATGGAGGGTCATTGAAGCAAAAGCTCTTATTGGAAAGTTAGAGTATCAAAGAGGTAACGTGGAAAATGCTCTTCGTATGTTTGATGAGATTGATGTTCAAGCAGTCATACAACAATTGCAAACCTCCCTTTCTGAGAGAACACCTGTCAAGAATACTTTGATGCTTGAAGCCGTCTACCTAAAAGCTAAGTCTCTACAAAAATTGGACAAACTTACTGAAGCTGTTAATGAATGCAAGGGTGTTGTTGATGCTGTTGAGAAGGCATTTAGCCAGGGTACACCTGATACAGTGGACAATAAATTGCAGGAGATAATCAGTCATGCAGTGGAGCTCCTTCCAGAGCTTTGGAAACAGTCTGGTTGCTATAATGAGGCTTTGTCTGCTTATAGGAGTGCCCTCCTTAGTCAATGGAATCTTGATGATGATTTTATTGCAAGAATTCAGAAGGCATTGGCTGTGTTTTTGCTGTACAGTGAAATGGAGACAAGTCCACCTAATAAGACTGATGGGTCTTACGTACCCAAAAACAATCTGGAAGAGGGAATTCTTCTTCTTATGATTATTTTGAGAAACTTCATCCTTGGTAAGATAAAGTGGGATCCTTTAGTTATGGAACACCTGATTTTCACACTTTCAGCATGTGGACAAACTTCTATTTTAGCAAAGCAATTTGAAGAGTTGACACCTGGTGTATATCACCGTATTGATCGTTGGAATTTTTTAGCTTTGTGTAATATTGGATCTGGAGAAAATAAGAGTGCGTTGAGTCTGCTTAGGATGTCTTTGCATAAACATGAACGACCAAATGACCTTATATCATTATTATTGGCTACCAAAATTTGTAGCGAGGATCCTCATCTTGGTGCTGAGGGAGCAGGTTATGCACAAAGAGTAATCAATAATGCTCAGGGATTAGATGAGCATTTGAAGGGTGTGGGTCTTAGGATGCTGGGACTTTGCCTAGGAAAACAAGCTAAGGTTTCTTCTTCTGACTTTGAGAGGTCTAAGCTTCAATCCAGAGCTCTGCAATCATTGGAGGAGGCAGTTAGATTGGAGCAAAACAATGCCGATCTATTTTTTGAATTGGCCATTCAATATGCTATGCACCGAAATTTAACTGCTGCTTTATCCTGTGCCAAGCAGTTCTTTGACAAAACTGGTGGCTCTAAATTGAATGGTTGGAGATTGATTGCTCTTGTTTTGTCTGCACAAAAAAGATTTCCAGAGGCCGAAGTGGTTATTGATGCAGCTTTAGACGAGACTGCAAAATGGGAGCAGGGGCCCCTTCTCAGGCTGAAAGCCAAGTTAAAGATCTCCCAATTACGGCCCATGGATGCTATTGAAACTTATCGGTACCTTCTTGCGTTGGTTCAGGCCCAGAAGAAATCATCCGGGCCTCTGGTAATGGAAACTAAGAAAATAGGAGCACTAGTCATAAAAGCAAGTTTATTGTTTAACAAGGATGGAGAACAGAGGAAAGCGGAGGATTATAAGATAAACGAACTTGAAGTTTGGCATGGTCTGGCAAATTTATATGCGAGCCTTTCTCACTGGAAGGATGCAGAAATCTGTTTGCAAAAGGCCAGAGAGTTACAGGAATACTCACCAGCAACAATACACGCTGAAGGCAAGAATAAATGTATTGTGTTCGAAGGTCGTGGACAAGATCTAGAAGCTCTCGTTGCTACGTTGAATGCGGTCCTATTTGAACCAAACTACGTGCCAAGCAAGATCTTGATGGCTTCTTTGATACTGAAAATTGGTTTAAATACTGCTGCGCCTGTTGCTAGATGCTTACTTTCTGACGCACTTAGAATAGAACCCACCAACCGTATGGCTTGGTATAACTTGGGATTAACTCACAAGGCTGATGGCCGAATAGTTGATGCTGCTGATTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCTGATCCCATTGAAAGTTTCAGCTCTTTGCTTTGA 2190 0.421 MESDENEPVTTREIRANGNCVKLSEVEAEVDAGNVEGAETTLRDGLSLTSETDPSSQPTIAICTTLKSEGSSSSKEWRVIEAKALIGKLEYQRGNVENALRMFDEIDVQAVIQQLQTSLSERTPVKNTLMLEAVYLKAKSLQKLDKLTEAVNECKGVVDAVEKAFSQGTPDTVDNKLQEIISHAVELLPELWKQSGCYNEALSAYRSALLSQWNLDDDFIARIQKALAVFLLYSEMETSPPNKTDGSYVPKNNLEEGILLLMIILRNFILGKIKWDPLVMEHLIFTLSACGQTSILAKQFEELTPGVYHRIDRWNFLALCNIGSGENKSALSLLRMSLHKHERPNDLISLLLATKICSEDPHLGAEGAGYAQRVINNAQGLDEHLKGVGLRMLGLCLGKQAKVSSSDFERSKLQSRALQSLEEAVRLEQNNADLFFELAIQYAMHRNLTAALSCAKQFFDKTGGSKLNGWRLIALVLSAQKRFPEAEVVIDAALDETAKWEQGPLLRLKAKLKISQLRPMDAIETYRYLLALVQAQKKSSGPLVMETKKIGALVIKASLLFNKDGEQRKAEDYKINELEVWHGLANLYASLSHWKDAEICLQKARELQEYSPATIHAEGKNKCIVFEGRGQDLEALVATLNAVLFEPNYVPSKILMASLILKIGLNTAAPVARCLLSDALRIEPTNRMAWYNLGLTHKADGRIVDAADCFQAASMLEESDPIESFSSLL 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03588 729 Gene3D Tetratricopeptide repeat domain 570 727 IPR011990 GO:0005515
Spst3g03588 729 PANTHER PROTEIN NPG1 81 726 IPR043376 -
Spst3g03588 729 Gene3D Tetratricopeptide repeat domain 22 569 IPR011990 GO:0005515
Spst3g03588 729 SUPERFAMILY TPR-like 415 717 IPR011990 GO:0005515
Spst3g03588 729 SMART tpr_5 311 344 IPR019734 GO:0005515
Spst3g03588 729 SMART tpr_5 687 720 IPR019734 GO:0005515
Spst3g03588 729 SMART tpr_5 467 500 IPR019734 GO:0005515
Spst3g03588 729 SMART tpr_5 578 611 IPR019734 GO:0005515
Spst3g03588 729 SUPERFAMILY TPR-like 506 664 IPR011990 GO:0005515
Spst3g03588 729 Coils Coil 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03588 Spst-Chr3 85885495 85889865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03588 3 729 Calmodulin-binding Proteins AT2G43040 58.478 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03588 K21843 - gmx:100811897 1031.94