Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03578 ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGGGGTGACAGTATTTGGTTACTTGTCAAGCTCATTTTCGACCTCAGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCAGAGAGACAACTTGTTGCCAATGATTCCGAATCACAGGGAAACTGGACCATTGAGTATACCAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTGAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAACAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCAATTTCGGAGCTTCAGAAGAAGGAGAAAGTCATACAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAGGAGAAAGAAAAGGTTGCAGCACAGCAGGCACAGTGGGAGCATCAAAACCATGGAGTTAATGCATCTTTCTTGCTTCCACAGCCACTTTTGAACATGGGTGGCAATTATCGTGAGGAGGCGCCAGAGGTGGGGAGGAATGAACTGGACCTGACTCTGGAACCGTTGTATTCGTGCCACCTAGGATGCTTTTGA 756 0.4603 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSWGDSIWLLVKLIFDLSMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHQNHGVNASFLLPQPLLNMGGNYREEAPEVGRNELDLTLEPLYSCHLGCF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03578 251 Coils Coil 166 196 - -
Spst3g03578 251 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g03578 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 Coils Coil 137 160 - -
Spst3g03578 251 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g03578 251 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Spst3g03578 251 FunFam MADS-box transcription factor MADS-MC 13 68 - -
Spst3g03578 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 SUPERFAMILY SRF-like 2 103 IPR036879 GO:0003677|GO:0046983
Spst3g03578 251 CDD MADS_MEF2_like 2 94 IPR033896 GO:0000977|GO:0045944
Spst3g03578 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst3g03578 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03578 Spst-Chr3 85818934 85824263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03578 1 251 MADS-box Gene Family AT1G26310 60.595 8.75e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst3g03578 K-box 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03578 K09264 - gmx:100810129 433.721