Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03576 ATGGAGGAGCCCGACGATCCTCCGAGCAGCAAACTTAAACGAACTTCTCCGGAAACATTTCAAGTGAACGAAGCGGTTGAGGTGAGGAGAGCACAGAAGGGGTTACGAGGGTCCTGGCACCCTGGGACAGTCATCGAGTGCGGTAGAGTGAAGTGCCATGTCAAATACGATAATGTTGGACAAAATGAAGGGTTGGATTCTTCTGTGGATGTAGTGAGGTTGTCATCAGCTTCTGAATCTTCAAACTGTAACATGCACATCAGGCCAGTGCCACCTTTGGTTGAGTTTCAGAGACTGGAACTTAAATATGGTTTGTGTGTGGATGTGAACTTTCAAGAAGCTTGGTGGGAAGGAGTCATATTTGATCACTCTGATGAAATGGATAAGAGGATCGTGTTTTTCCCTGATTTGGGTGCTGAAATGAAATTTGATATTCGTCAACTGCGGATTACTCAGGACTGGAACGAACTTACACACGAGTGGAAGCAACGAGAAAACTGGGTTTTTCTTGATTTGCTTGACGAGTGTCATAATTCAACATTCGCAGCATCAGCAAGACAAATTTGGTTTGATGTACAGGAAAAGTTGAATTATGGCACGAAGGGAGAGTGGATATATAATGTGAAGGACTTGTATAGAAATGTGGTGAGTGATATAGTTAATGACTACAAAACTCTTTCGGTAAGACAAGCTTTCTCAGACTTAAAACTTCCAGAGAGTTTACAAGATGAAAGACCAGATCAAGAACCAGTTGAACCAATTATGGCATTGCCTGTTAAGAAAGTTTTGGTTCAGGAAGAACCTGTTCCTCCAGATGAGTTTGAAAGACAAATAAATCTGGACGGTGCGGCTGAAGGAGTCTCTGGTGCCAGATGTTCTGAAAGAAGTAGATCAACTCAAAATCAAGAGAGGAGAAACTCAAGGGCTTCAAAGACAATCAGATCTAAGAGCCAAAGCAATAGATTATCTTCACAAGAAGCCGGATCAAATAAGTGGGTGACAAAGGTGTCCTCCCCTCCTCTGATACCCCAGAATAAACCTCTTACTATTTTGTCTTGGTTAATTGACAACAAGATGGTCCTTCCAAGGAGTAACATTTACTATTACAACGAACAAGAAGGGTACTATGCAGCCTCTACCATGGCTATGGGGAGAATATCTCGCAATGGAATCAAGTGTAGCTGTTGTCACTTGATACACGGCATAGTTGGCTTTGAAAGTCATGTTAGTGGGGGTAATACCTGCATACCCGCGGCTAATGTTTTTTTGAAAGATGGTAAATCACTCTTAGAATGCCAAATAGAGATAATGCAAAAACACATGAGAAAGGAAGCTGGTGAAAATTCAGGAAGTAATTTTTTTCTAGCCGACAATGACTTCGTTTGTTCCATTTGCCTCTTTGGTGGTGAACTTATTTTATGTGATCAATGCCCGTCTTCATTTCACCAGAGGTGTCTTGGGTTGGAGGATATCCCTGATGGTGAATGGCATTGCCCACAGTGTCGTTGCCGAATTTGTGGCCAAAGCAAAGTAGAGGGAGACGACGATGGACATGCCCTTACTTGTGTTCAGTGTCAACTTAAATATCATGTTAAGTGCCTGGAAAATGAAGGTGTAGATACATCAGGATGTCCAGAAAACTGGTTCTGTGGAAGAAGCTGTGAAAGGATACACGATAGCCTTCATCAGCTATTAGGAAGGCCAGTTTCAGTGGGTGTGGACAATCTAACCTGGACATTGGTGAAGTTTATCAAGCCTGACACTGATGATCGTGGTAGAGTTAGAGGTGGCAGCTTAATGGCAGAAAATTACAGCAAACTCAATCTTGCTCTTTCGGTGATGCATGAATGTTTTGAACCATCTATCTCAACCCTAAATTTCTATGAAGATGTTATATTCAGCAGAAGGTCAAAGCTCAACCGACTCAATTTCCAGGGTTTCTATACTGTTCTACTCGAGAAAAATGAAGAAGTGGTTTGTGTGGCACTTGTTAGGATCCATGGGGCGAAGGTAGCAGAAGTACCTCTTGTTGGCACCAGATTACACTTTCGTAGACATGGATTCTGTCACATTTTAATGAGTGGGCTTGAACAGAATAATAATCTGGTCCTTCAAAATGAAGCAATGGTTGAAGATGACCAAATAGTTAAACATGCCTTTACCTCCCAATTGCCTTTAGAAAATTTGCTTATGCAATTAGGTGTGGAGAGGGTTGTTTTGCCATCTATTTCTAGTACGCTGAAGACATGGACTGGATCTTTTGGTTTTTCAAAGATGGCCGATTTTGAGAAGTCTCAATTTATGGACTATATCTTCTTAGATTTTGAGAATAGCATCATGTGCCAGAAGCTGTTGGGGAACATTCCACCTCCAAATGCAGAGTCACAACCCAGACCTGAAAGTGGTGGTAACTTAGATAAGTCTAGCCCGGTATCGAATGAAAGGATGCAGGATCAGCAAATGGGGAATACTTGTCCAGGCAACAACAATGATCATGCCGTTGGCGTTAGTGATCCTGTAAACATGGTGGAGAAAGTAGTTCCTAGTGATCAGAAGTGTCATAATGCAAGCAGCTCAAGGTGCTTTGATGAAGAAGAAGACGGTGAGGAGAACAATCCTCAAAAGAAAGTGAGAAAGGTGGTGCATAAGGGGAGACATGTCTGA 2664 0.4223 MEEPDDPPSSKLKRTSPETFQVNEAVEVRRAQKGLRGSWHPGTVIECGRVKCHVKYDNVGQNEGLDSSVDVVRLSSASESSNCNMHIRPVPPLVEFQRLELKYGLCVDVNFQEAWWEGVIFDHSDEMDKRIVFFPDLGAEMKFDIRQLRITQDWNELTHEWKQRENWVFLDLLDECHNSTFAASARQIWFDVQEKLNYGTKGEWIYNVKDLYRNVVSDIVNDYKTLSVRQAFSDLKLPESLQDERPDQEPVEPIMALPVKKVLVQEEPVPPDEFERQINLDGAAEGVSGARCSERSRSTQNQERRNSRASKTIRSKSQSNRLSSQEAGSNKWVTKVSSPPLIPQNKPLTILSWLIDNKMVLPRSNIYYYNEQEGYYAASTMAMGRISRNGIKCSCCHLIHGIVGFESHVSGGNTCIPAANVFLKDGKSLLECQIEIMQKHMRKEAGENSGSNFFLADNDFVCSICLFGGELILCDQCPSSFHQRCLGLEDIPDGEWHCPQCRCRICGQSKVEGDDDGHALTCVQCQLKYHVKCLENEGVDTSGCPENWFCGRSCERIHDSLHQLLGRPVSVGVDNLTWTLVKFIKPDTDDRGRVRGGSLMAENYSKLNLALSVMHECFEPSISTLNFYEDVIFSRRSKLNRLNFQGFYTVLLEKNEEVVCVALVRIHGAKVAEVPLVGTRLHFRRHGFCHILMSGLEQNNNLVLQNEAMVEDDQIVKHAFTSQLPLENLLMQLGVERVVLPSISSTLKTWTGSFGFSKMADFEKSQFMDYIFLDFENSIMCQKLLGNIPPPNAESQPRPESGGNLDKSSPVSNERMQDQQMGNTCPGNNNDHAVGVSDPVNMVEKVVPSDQKCHNASSSRCFDEEEDGEENNPQKKVRKVVHKGRHV 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03576 887 SUPERFAMILY FYVE/PHD zinc finger 447 502 IPR011011 -
Spst3g03576 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 503 IPR013083 -
Spst3g03576 887 PANTHER PHD FINGER PROTEIN 12 244 874 IPR042163 GO:0003714|GO:0045892
Spst3g03576 887 MobiDBLite consensus disorder prediction 312 336 - -
Spst3g03576 887 MobiDBLite consensus disorder prediction 797 835 - -
Spst3g03576 887 MobiDBLite consensus disorder prediction 788 887 - -
Spst3g03576 887 Pfam PHD-finger 461 503 IPR019787 -
Spst3g03576 887 MobiDBLite consensus disorder prediction 285 336 - -
Spst3g03576 887 Pfam Tify domain binding domain 384 435 IPR032308 -
Spst3g03576 887 SMART agenet_At_2 18 82 IPR014002 -
Spst3g03576 887 SMART agenet_At_2 99 156 IPR014002 -
Spst3g03576 887 Pfam Agenet domain 24 92 IPR008395 -
Spst3g03576 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 557 IPR013083 -
Spst3g03576 887 ProSiteProfiles Zinc finger PHD-type profile. 459 504 IPR019787 -
Spst3g03576 887 CDD Tudor_Agenet_AtDUF_rpt1_3 20 92 - -
Spst3g03576 887 SMART PHD_3 503 555 IPR001965 -
Spst3g03576 887 SMART PHD_3 461 502 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03576 Spst-Chr3 85808327 85814547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03576 300 706 PHD Transcription Factor Family AT5G58610 42.790 1.96e-99 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst3g03576 Agenet 1.5e-11 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03576 - - var:108323857 953.355