Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03572 ATGCAGATTGGCAAAACAGTGTCGCATTGTAGGTACCTCATGCATAAGGCATTGGCAAGGAAGCAGGAGAAGAACACGCTGGTGCGGTCTGCATCTGAAACAATACGGAGGAGATCATTTGGTGGGGTCCACATGACGGGAATCTGCAGAATAAGCAAAGATCAACAGTGTGGTCTAAATATGTACGAAGAAAATAGTTGCTTTGATCCCAATGGGATGGTGGCAGGAGAAGACTGTTTTTCCCAAATGGTTGCAAAATCGGAGGCAGTTATGTCTGTGACTAGCACACAGCCCCACAACACCTTTGGGATGGAAAACTTAGCTTACACATATTCCAGTGGAGAAGATGCTTCTGCTGTTGCTATGGAAATCATTGCACACCCCCATCAAAACTCATACAATCATGCCAATAACTTGAATACGCAGTTTGTGCACATGGTGAACAACCATGGTTCATGTGAGGAGCTTTATTCTTTCCCTCCTCACTCCTCCACAATTGAGAGGGGTCACCATGATCACCAATTCCCTTACTCCACACCAACACCAGATCTCCTCAACCTTCTCCACTTGCCAATGACCTTTGAAAACAAAAGCGGCAATCTTCCAAAACCCTCTGGCCCTATGGGAACAGCAGACAGCACAAACGTCTCCTCTGTTTCCTATGACCCTTTCTTGCATCTCAACCTTCAAGCACCTCCCCCAGCTCTGAGAAATGATTTTGCCTTTGGAGGAGGGGGTGCCCTAGAAGGCAGTGGAATTGCGTACCAAGATTTTGGAAATGGGGTAGTTGAGTTCACTCAAGATGTTGGGAAAAAGAGAGGGGGGAAAAGGACCAAGCAGTTCACCAGTACTACCACTGAGAGACAAAGGAGAGTGGATTTGAGCAGTAAATTTGATGCTTTGAAAGAACTGATCCCAAACCCCTCCAAGAGTGATAGAGCATCCGTGGTGGGAGATGCTATTAACTATATCAGAGAGCTTAAGAGGACAGTGGACGAGCTAAAACTACTGGTGGAGAAGAAAAGGCACGAGAAACAAAGGGTAGCAGTGATGATGAGGCACAAGGTTCAAACTGAAGGGCAAGGTGACTCCAATATCGACCCAGATGATGGTTCCTACAATGAAAGCTTAAGAAGTTCTTGGATACAAAGGAAATCCAAAGACACCGAGGTTGATGTGCGTATTGTTGACAACGAGGTAACGATTAAGCTTGTTCAAAGGAAGAAAGTGGATTGCTTGGTGCATGTCTCAAAGGTTCTTGATCAACTCAACCTGGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTGTTCAATACCAAGATATGCGATGGTTCTTCAGTTTATGCAAGTGCTATAGCCAACAAGCTCATTCAGATCATGGACACAAGTTTGGCAGCAGTGTCACTGAATTAA 1431 0.4549 MQIGKTVSHCRYLMHKALARKQEKNTLVRSASETIRRRSFGGVHMTGICRISKDQQCGLNMYEENSCFDPNGMVAGEDCFSQMVAKSEAVMSVTSTQPHNTFGMENLAYTYSSGEDASAVAMEIIAHPHQNSYNHANNLNTQFVHMVNNHGSCEELYSFPPHSSTIERGHHDHQFPYSTPTPDLLNLLHLPMTFENKSGNLPKPSGPMGTADSTNVSSVSYDPFLHLNLQAPPPALRNDFAFGGGGALEGSGIAYQDFGNGVVEFTQDVGKKRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVDELKLLVEKKRHEKQRVAVMMRHKVQTEGQGDSNIDPDDGSYNESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKVDCLVHVSKVLDQLNLDLQHVAGGHIGDFCSYLFNTKICDGSSVYASAIANKLIQIMDTSLAAVSLN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03572 476 Coils Coil 324 344 - -
Spst3g03572 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Spst3g03572 476 PANTHER TRANSCRIPTION FACTOR BHLH91 60 474 IPR045895 GO:0006355|GO:0048658
Spst3g03572 476 SMART finulus 284 333 IPR011598 GO:0046983
Spst3g03572 476 Gene3D - 270 357 IPR036638 GO:0046983
Spst3g03572 476 Pfam Helix-loop-helix DNA-binding domain 286 327 IPR011598 GO:0046983
Spst3g03572 476 CDD bHLH_AtMYC1_like 285 343 IPR045896 -
Spst3g03572 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 346 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03572 Spst-Chr3 85774231 85776382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03572 61 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 38.938 2.45e-83 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g03572 HLH 5.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03572 - - vra:106767981 758.059