Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03559 ATGGATTCCTTTCCCTCTTTCAATACTCCAACTCATCATCATAATGATGATGATGATGCCTTTCCACAACCACCACCACCACCACCACCACCGTCTACAGCGCCACAGCCACCCACCCTCTCACTCCTAGTTCCCAAACCAGAACCCTTCTGGGCCTATAACCATGATGATATCGGTGACCAACTCGACCTACTCACTGAGTTCAAACGAGTCACCGAGTTGTTCCAGCTCGCTTTCGGAGACACCAATGTCGTTATTCCCTCCACCCCTTTCGGACTTATAAACAGTGCTAATGCATGCTCCGACCCTTCTCCTTCTGCGGACGTCGATTCCACGCCTCAGACCCAGCCCAATTCGTCCTCCTCCGCCAGCGACGCCTCACGCGCGATCGTCCCCGTCGTGGACGGCACTGTGAGGGTGGCAACGCGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGCGGATGATGGGTTTGTCGGCGAGTGAAGAGGCGCAGTTGCGGGAGGTGTTGAGGCGCACGCGCCTGCTATACGACTCGCTGCGCGTGTTGACCGCTATCGAGGAGGAGAAGCGGGTGGCCGGCCTGGCGGAGGCGACAGAGACGGCGAAGGCGGTGAAGGGCCGTGGGCGGCGTCTCCGCGGTGACCTGCGAGCTGCTACACTGATGCGGGCGCGTGGACTGTGGCTGAACCGCGAGCAGCGAATCGTCGGGGCCATTCCCGGGATTATGGTGGGGGATTTGTTCCTTTTTAGGATGGAGTTGTGTGTGGTTGGGTTGCACGGGCAAATACAGGCTGGCATTGATTATCTTCCTGCAAGTGTGAGCCCCTCTGGGGAGCCTATAGCTACCAGTGTCATTGTTTCTGGGGGTTATGAGGATGATTTGGATGATGGTGAGGTCATAATCTACACTGGCCATGGAGGGCAGGGGAAGAATTCGTCTAAGCAGATTGCGGATCAGAAGTTGGAGGGAGGGAACCTTGCATTGGAAAGGAGTATGCATTATGGTGTCGAGGTGAGGGTTATCCGTGGGATGAGGTACGAGGGGAGTGCTTCTGGTTCTGGTAGGGTGTATGTGTATGATGGAGTGTATAAGATTGTTGATCAATGGGTTGATAAGGGGAAGTCTGGTTTTGATGTTTTCAAGTTTAAGCTTTGGAGGATTGAGGGGCAGGCTAAGATGGGGAGTGCTATTTTGAAGGACGCTAAGAATATTAAGACGAGTGAGTCGCATTTGCATTGTCTTTCTGCTGATATTTCCAACAAGATGGAGAGTGTTGCTGTTAGGCTTTTTAACGACATAGATGACGATCAGGGTCCTTTTAACTATGATTATCTTGCCAGGACTAGTTTTCCACCTTTTGTGTTTCATCAGAGTGGGCAAGCTACTGGTTGTGACTGTGTGGATGGTTGTGGTGATCGATGCTTTTGTATTATGAAAAACGGGGGCGAATTTCCTTATACTCTGCAGGGGCATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTCCTCCTCATTGTCGCAATCGTGTTACGCAGAAGGGGCTGAAGTATAGTTTGGAAGTGTTTAGGTCTCTGCAGACAGCTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCCGGTACTTTTATCTGCGAGTTTGCAGGGGTTGTTTTGACCAGGGAGCAGGCGCAACTATTTGCAATGAATGGTGACTTGGCCATATATCCTAATCGCTTTTCTGAAAGATGGGCAGAATGGGGCGATTTGTCTCAAGCAGACCCAAAATATTTGCGTCCGTCCTATCCATCTATTCCTCCTCTAGATTTTTCTCTGGATGTATCAACAATGAGGAATGTTGCTTGCTATATGAGCCATAGCTCAACTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGACCACAACAACTTGATGTTCCCACACCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGGTGACAGGCAAGCTCTCTATATGCAACTGA 2043 0.5051 MDSFPSFNTPTHHHNDDDDAFPQPPPPPPPPSTAPQPPTLSLLVPKPEPFWAYNHDDIGDQLDLLTEFKRVTELFQLAFGDTNVVIPSTPFGLINSANACSDPSPSADVDSTPQTQPNSSSSASDASRAIVPVVDGTVRVATRRKQSRQKELVRMMGLSASEEAQLREVLRRTRLLYDSLRVLTAIEEEKRVAGLAEATETAKAVKGRGRRLRGDLRAATLMRARGLWLNREQRIVGAIPGIMVGDLFLFRMELCVVGLHGQIQAGIDYLPASVSPSGEPIATSVIVSGGYEDDLDDGEVIIYTGHGGQGKNSSKQIADQKLEGGNLALERSMHYGVEVRVIRGMRYEGSASGSGRVYVYDGVYKIVDQWVDKGKSGFDVFKFKLWRIEGQAKMGSAILKDAKNIKTSESHLHCLSADISNKMESVAVRLFNDIDDDQGPFNYDYLARTSFPPFVFHQSGQATGCDCVDGCGDRCFCIMKNGGEFPYTLQGHLVKGKPLIFECGPFCSCPPHCRNRVTQKGLKYSLEVFRSLQTAWGVRSLDLIQAGTFICEFAGVVLTREQAQLFAMNGDLAIYPNRFSERWAEWGDLSQADPKYLRPSYPSIPPLDFSLDVSTMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEVTGKLSICN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03559 680 SMART preset_2 416 508 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst3g03559 680 Pfam SAD/SRA domain 236 391 IPR003105 -
Spst3g03559 680 MobiDBLite consensus disorder prediction 1 42 - -
Spst3g03559 680 MobiDBLite consensus disorder prediction 21 42 - -
Spst3g03559 680 MobiDBLite consensus disorder prediction 101 127 - -
Spst3g03559 680 SUPERFAMILY SET domain 410 668 IPR046341 -
Spst3g03559 680 SMART set_7 524 673 IPR001214 GO:0005515
Spst3g03559 680 SMART G9a_1 232 391 IPR003105 -
Spst3g03559 680 Gene3D SET domain 396 680 IPR046341 -
Spst3g03559 680 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 104 668 - -
Spst3g03559 680 SUPERFAMILY PUA domain-like 218 399 IPR015947 -
Spst3g03559 680 Pfam SET domain 536 667 IPR001214 GO:0005515
Spst3g03559 680 ProSiteProfiles Pre-SET domain profile. 463 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst3g03559 680 ProSiteProfiles SET domain profile. 524 667 IPR001214 GO:0005515
Spst3g03559 680 Gene3D - 234 395 IPR036987 -
Spst3g03559 680 ProSiteProfiles YDG domain profile. 237 387 IPR003105 -
Spst3g03559 680 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 77 680 IPR025794 GO:0016571
Spst3g03559 680 MobiDBLite consensus disorder prediction 101 128 - -
Spst3g03559 680 Pfam Pre-SET motif 419 516 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03559 Spst-Chr3 85695751 85697793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03559 139 669 Su(var)3-9 homologs AT5G04940 37.989 3.19e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst3g03559 SAD_SRA 6.6e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03559 K11420 - gmx:100785015 966.837