Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03548 ATGGAGCTATTCCCAGCACAGCCAGATTTGTCCTTGCAAATCACCCCTCCAAACAGCAAATCCACATCAAGTAATTGGAGGAGAAGCACAGAAGAGGAGATGGATTTGGGGTTCTGGAAGAGAGCTTTGGAGTCCAAAACAAACTCATCCTTAGTCAAAACAGATCTCTCCCTCTCCAATCCAAGGGCTTCTTCTTCAAACACCAACACCAACACCCCCAACCCCAACCCCAACCTTACCCACCACTTCAACAAGAACAAGAATAATAATGTCATCCCCATCCCGCAAAACCACTTCTTTCACCACCAAATCCTGAGCCAAGACCTAGGTTTTCTGAGACCCATAAGAGGAATCCCAGTTTACCAAACCCCTCCTTTCTCATTTGCTCATTCAGAGCCCCTACTACATGCTCCCTTCAACGCACCCACAGCTTCAAGCCCCTTCCTCTCCCAAGCTCTGATCAAGTCAAGGTTCCTCTCACGCTGTCCTCCTAAGCGTAATGTCAGGGCTCCTCGGATGCGTTGGACCACTGCACTCCATGCCCGCTTCGTCCATGTCGTTGAACTTTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTGACTTTAGCACATGTTAAGTCTCACTTGCAGATGTACCGGACGGTGAAAACTACAGATAGAGCTGCGGCATCATCGGGGCAATCTGATACTTATGGTAATGGCTCTTCTGGAGATACTTCTGAAGACTTCATGTTTGATATAAACTCAAGGAGGTCTGAACTATCTATTAAGCAGGCAAGAACAAGTATTAATCAAGATAATGACAATGGTGGCCTTTTGAACAACTCTTCCAGCAAGGAAGCTTGGTTGCACGACAAGCCAAAGGTTGTTGATTCTATTGGAAACCTGCCTTCTGCTGAGGGAATGGATCCAAAGGGCCTGAGCAATGAAACATCAGATAGAAACTCATCTTCAAACATATCAGGATCAAGCGCCAAGAAGCCAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGA 1053 0.4634 MELFPAQPDLSLQITPPNSKSTSSNWRRSTEEEMDLGFWKRALESKTNSSLVKTDLSLSNPRASSSNTNTNTPNPNPNLTHHFNKNKNNNVIPIPQNHFFHHQILSQDLGFLRPIRGIPVYQTPPFSFAHSEPLLHAPFNAPTASSPFLSQALIKSRFLSRCPPKRNVRAPRMRWTTALHARFVHVVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDTYGNGSSGDTSEDFMFDINSRRSELSIKQARTSINQDNDNGGLLNNSSSKEAWLHDKPKVVDSIGNLPSAEGMDPKGLSNETSDRNSSSNISGSSAKKPNLDLEFTLGRSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03548 350 SUPERFAMILY Homeodomain-like 168 224 IPR009057 -
Spst3g03548 350 MobiDBLite consensus disorder prediction 229 253 - -
Spst3g03548 350 MobiDBLite consensus disorder prediction 11 25 - -
Spst3g03548 350 Gene3D - 170 227 - -
Spst3g03548 350 MobiDBLite consensus disorder prediction 271 350 - -
Spst3g03548 350 MobiDBLite consensus disorder prediction 318 338 - -
Spst3g03548 350 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g03548 350 MobiDBLite consensus disorder prediction 50 86 - -
Spst3g03548 350 MobiDBLite consensus disorder prediction 271 290 - -
Spst3g03548 350 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 349 IPR044847 GO:0000976|GO:0006355|GO:0010158
Spst3g03548 350 FunFam Myb family transcription factor 169 227 - -
Spst3g03548 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 171 224 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03548 Spst-Chr3 85485726 85490189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03548 1 347 G2-like Transcription Factor Family AT4G17695 36.675 1.04e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst3g03548 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03548 - - aprc:113868756 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03548 3 85485726 85490189 Spst3g03548 3 85485726 85490189 ECH
Spst2g01212 2 10729287 10733575 Spst3g03548 3 85485726 85490189 PCT