Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03547 ATGGAAGCTAGAAATGGGTTAGAATATTTGAAACATAAAAGGCTTCAGCGAGCAAAATCTGCTACTGCCAGTGCCAATGCAACAAACATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGAGCTTCTGCATCTTATAGTATGAGGTTGCACGGTGATTCAGGTAGCTTTTCCAAGCGGAAGGTGGATAAGTTTAACACAAGTGATCTGGCATGGATTGAGCAAATTCCCGAGTGTCCTGTATATTATCCAACAAAGAAGGAGTTTGATGATCCCTTACTTTATTTGCAAAGAATAGCTCCTGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTACTTCTGTTCCAGCTGGGATTGTTTTAATGAGGGAGCAAGCAGGATTCAAGTTTACAACTAGAGTGCAACCCCTCCGTCTTGCCGAATGGGATACCGAGGACAAAATGGCGAACAAGGCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAGAAAGAGTTCTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCTTCTTTGCCCACTGATCAACTTGGGAAAAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAATCGATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATATAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCATTGGAATTCGAAAGGGTGGTAAGAGAGCACGTGTATACTAATGATATTTTGTCAACTGATGGGGAAGATGGAGCTTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTATATAATAACTTTCCCCAGAGCATATCATGCCGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCAAGCCAAAGATATGCACTTCTTCACAGAGTTCCTTTGCTGCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTATGTATGCAAGATTAAAACTTGAAGATTCAGACATTTCCCCCGAAGATTTGTTATCTCATAATTGTGTTATGATTTCTTTTGTTCATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTCTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACGTTCCCAGGGTACAATTCTCTGCAGCCTCTGCAAACGGGACTGCTATGTGACGTATGTTGACTGTGAATGTCACTTACATCCAGTATGTCTTCGCCATGGAATAGATTCTCTTGACTTCACTTGTGGTACCAAACGCACACTTTATCTTAGGGAAGATACGTCAGACATGGAAGCTGCAGCCAAGAGATTTGAGCAGGAAGATGGAATATTGAAACAGATACTTAAGCAAATGAAAAGTGACAAAAACATCTATTCATACCCTTTGTCAAACATGTTCCAGATGGCTGAGGCAAATGGATACACACCTTATTGTGAGATGAAATTTGATTTTGTTACTAATTTTTATTCCACCCCAAAGCTGTCAGCAAATAATCAAGAGTGTATACGAAGTCAATTTGTTTCTAGACCCGAAGTAACTTCTGCTTCATCTGCTCTACGTTCTCTTTCGAAAGCACCTGAGATCTCTTCCAATATCGATGAGGCTCATGCTAACTTTAAATTAGTCAGTCCTGATTTTGGAGAGAATTGTGAAAGAATATCCAATAGTGCTTCTGAGTCTTTGCAATCCCCTGCTCAGTATGAATTCCCTAATAAATATATGGCCCATGTTCATGGATTAGAGAAGAACGTTGTGGATAACGAGAGTGATGATTCTGATACCGGGATCTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATGTTAGAGGTGCTACGTTTTCAACAAATTCTGCACAGCAGGGACTCGAACAATTGAAGAAAGACCTTCACGAAGGAAGGAATGTGCAACCTGTAGATATGAGCAAAAGCAAGGAAACGAGTTACAAATATAGTCACGGTGTTAGTCATAAGGTTAATGGTGAAATTTCCTCGAGGGACAAATTTGCTTGGGGAAATAGCATTCCCCTATCCGTAAGATATAAGACAAGTAATGAGGAAGTTAGTAGACGACGACATCATTGCCAGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGATGCCCTTCATTTATGGGCTTGGATAGCAGATAG 2424 0.4088 MEARNGLEYLKHKRLQRAKSATASANATNIANMMNRSGGDALRASASYSMRLHGDSGSFSKRKVDKFNTSDLAWIEQIPECPVYYPTKKEFDDPLLYLQRIAPEASKYGICKIISPLSTSVPAGIVLMREQAGFKFTTRVQPLRLAEWDTEDKMANKAFAQRYCSAGCLPATYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSTDGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRVPLLPHEELLCKEAMLMYARLKLEDSDISPEDLLSHNCVMISFVHLMRFQHCARWLLMKSRACTSVSSRSQGTILCSLCKRDCYVTYVDCECHLHPVCLRHGIDSLDFTCGTKRTLYLREDTSDMEAAAKRFEQEDGILKQILKQMKSDKNIYSYPLSNMFQMAEANGYTPYCEMKFDFVTNFYSTPKLSANNQECIRSQFVSRPEVTSASSALRSLSKAPEISSNIDEAHANFKLVSPDFGENCERISNSASESLQSPAQYEFPNKYMAHVHGLEKNVVDNESDDSDTGIFRVKRPSSLKAERRNVRGATFSTNSAQQGLEQLKKDLHEGRNVQPVDMSKSKETSYKYSHGVSHKVNGEISSRDKFAWGNSIPLSVRYKTSNEEVSRRRHHCQTDRLLHSIEVAPKRLKARCPSFMGLDSR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03547 807 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 709 - -
Spst3g03547 807 Pfam jmjN domain 82 114 IPR003349 -
Spst3g03547 807 ProSiteProfiles JmjC domain profile. 211 381 IPR003347 -
Spst3g03547 807 FunFam Lysine-specific demethylase isoform A 76 408 - -
Spst3g03547 807 Pfam JmjC domain, hydroxylase 241 364 IPR003347 -
Spst3g03547 807 SMART cupin_9 208 381 IPR003347 -
Spst3g03547 807 Gene3D Cupin 81 423 - -
Spst3g03547 807 Pfam C5HC2 zinc finger 461 512 IPR004198 -
Spst3g03547 807 SUPERFAMILY Clavaminate synthase-like 201 397 - -
Spst3g03547 807 ProSiteProfiles JmjN domain profile. 81 122 IPR003349 -
Spst3g03547 807 SMART JmjN_1 80 121 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03547 Spst-Chr3 85468857 85476699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03547 208 406 C2H2 Transcription Factor Family AT5G04240 45.729 2.12e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst3g03547 JmjC 6.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03547 - - vra:106765852 1327