Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03545 ATGGACGGAGTGAGCAGTAGCGGCGGAGAAGTGTCGACGCCGGCGCCGGCACCGATTCCCAACGCTAACGCGCCCCCGCCTTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCGACGGACTCGATTGTGTCGTGGGGCCCAACGAATAACAGCTTCATTGTTTGGAACCCTCCCGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACAGAGACCGCAAAGTGCAGGGTTTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAACGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACTATATCTCGGAGGAAACCTGCCCATGGTCATAATCATCAACAAGCACAACAAGTACATGGACATGGACAGAGTTCATCGATTGGGGCTTGTGTAGAAGTTGGGAAATTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAATCTACTGATAACCAGCTGCAGACCATGGTTCAACGCCTTCAGGGAATGGAGCAACGACAGCAACAGATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAGCAGAATGAGAATAATAGACGCATAACAGAAGCGAACAAAAAACGTCGACTAAAGCAGGAAGGTATTAGTGAAACAGAACAAACCGCCACTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGTTAAGGCAAATAATGAAATTGGATGCTTCTCGACTAGAATCTTTTAGTAATAACCCCGATAATTACTTGATTGGTGATGATTCATCACCGTCCAGTGCAATGGACAGGGGAAACCCTTTGAGTCGGTCTTCTGGGTTAACACTTCAAGAGGCCCCCCCAACGACAGTACAGTCTTCTCACGTTTCATCTGCAACAAGGACTAAAGGGCATGGTCCTTCAACTGGAAAATCTGAGATTCTATCTTCTCGGCAAGTTGCAGCCTGTGAAGAAGTTACATATCCTAATATAAATGTTTCAGTTGGAGAACCTAGTGCACCTGCTATCCCTGTTACTCAAACAGATGAAATCATGACGGACCTTTCTACAATACCAGATATAGTGGCAGGAAATATCCTTGATATTCCTCAAGAAAATTATATGGCAGCAGAGACGGGTAGTGAGGGATATATGGACCCTACTTCATTTGGCGTGAATTTGTCACTGCCCCTTGATTTTGATAGTATTTCACCTGAAGCAGACATCGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTGAAACGAATGGTGCTCAAGAATTCAATGAGAATGGGGTGCAGCCAATGGAAAATGGATGGGGAAAATCTCAACATATGGACCAACTGACTGAGCAGATGGGCCTACTTTCTTCTGATGCAAAAAAAAATTGA 1521 0.4497 MDGVSSSGGEVSTPAPAPIPNANAPPPFLSKTYDMVDDPSTDSIVSWGPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYRDRKVQGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNHQQAQQVHGHGQSSSIGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQQNENNRRITEANKKRRLKQEGISETEQTATSDGQIVKYQPLINEAAKAMLRQIMKLDASRLESFSNNPDNYLIGDDSSPSSAMDRGNPLSRSSGLTLQEAPPTTVQSSHVSSATRTKGHGPSTGKSEILSSRQVAACEEVTYPNINVSVGEPSAPAIPVTQTDEIMTDLSTIPDIVAGNILDIPQENYMAAETGSEGYMDPTSFGVNLSLPLDFDSISPEADIDDLLNNPHFWDDIETNGAQEFNENGVQPMENGWGKSQHMDQLTEQMGLLSSDAKKN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03545 506 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g03545 506 MobiDBLite consensus disorder prediction 234 249 - -
Spst3g03545 506 MobiDBLite consensus disorder prediction 291 357 - -
Spst3g03545 506 SUPERFAMILY "Winged helix" DNA-binding domain 23 123 IPR036390 -
Spst3g03545 506 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 308 IPR027725 -
Spst3g03545 506 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03545 506 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03545 506 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03545 506 Coils Coil 154 181 - -
Spst3g03545 506 Gene3D - 21 124 IPR036388 -
Spst3g03545 506 MobiDBLite consensus disorder prediction 227 258 - -
Spst3g03545 506 Pfam HSF-type DNA-binding 28 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03545 506 SMART hsfneu3 24 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03545 506 FunFam Heat shock transcription factor 1 21 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03545 Spst-Chr3 85453109 85458184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03545 14 500 HSF AT1G32330 52.918 5.81e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst3g03545 HSF_DNA-bind 2.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03545 K09419 - gmx:732544 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03545 3 85453109 85458184 Spst3g03545 3 85453109 85458184 ECH