Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03543 ATGGGTAGAGCTCCATGCTGCGACAAGGCCAACGTGAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTGCACTTAAAACCTACATTGAAAAGAATGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAACATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAACCTTTACATTAGCATTGGTAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAATTGCTTGGGAGGCGCAAACAATCTAACTTCAACGGAAAAGACGCAAATAGTGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGTTCAGCTCTTGAAAGACTCCAATTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAATAACCCTGCGCTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGTCTGCAATCTTTGAGTGATGGCTCTAACCCTGTGACGCAAGATGCTTTGCCTTCCCCACATCTCGAACAAGGACAAAAAGATGAGTTCATCTACAAGCCTCAACATGATGGTGCAAAGATCCATAGCCCACAGGTTCATCTTTTGGAGAATATTCCTTTAAGTAACAGTGGAGTTCCCCTTGTTGCTTCTGGGAGCAATAATAATCCAATGCACTCAAGTCTTGCACCAAGAGCTGATCAGGCTGTTGGACAGACTAATAATGTGGGATTGCAGCAACTTGGTGCACTGCAAACTGAACTAGATGACATTCTCAACGACAGAACAATGGGTTATGTGCCACATGAAGATCATCAGATAGCTGAATTTGATTGTTTCAGAGAGATAAATGGCTCAAAGGACAGCTTGATTTGGTGGTCCAATGATTCTGATACCAAATCAGCATCCTCAAATTCCTGGGATTCATCTACTACTCCAGCTCTTTTAACACAAGGGATGTTCCAAGATTATGAACTGGGTTACAGTCTGTAG 1089 0.427 MGRAPCCDKANVKKGPWSPEEDAALKTYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNGKDANSGIEENSYSNALSSSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIQSLQSLSDGSNPVTQDALPSPHLEQGQKDEFIYKPQHDGAKIHSPQVHLLENIPLSNSGVPLVASGSNNNPMHSSLAPRADQAVGQTNNVGLQQLGALQTELDDILNDRTMGYVPHEDHQIAEFDCFREINGSKDSLIWWSNDSDTKSASSNSWDSSTTPALLTQGMFQDYELGYSL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03543 362 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst3g03543 362 CDD SANT 71 113 IPR001005 -
Spst3g03543 362 Gene3D - 70 141 - -
Spst3g03543 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Spst3g03543 362 MobiDBLite consensus disorder prediction 191 206 - -
Spst3g03543 362 FunFam Transcription factor MYB36 70 140 - -
Spst3g03543 362 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst3g03543 362 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Spst3g03543 362 CDD SANT 16 62 IPR001005 -
Spst3g03543 362 PANTHER OS09G0431300 PROTEIN 1 345 - -
Spst3g03543 362 FunFam Transcription factor RAX3 7 68 - -
Spst3g03543 362 Gene3D - 7 68 - -
Spst3g03543 362 MobiDBLite consensus disorder prediction 191 210 - -
Spst3g03543 362 SMART sant 67 115 IPR001005 -
Spst3g03543 362 SMART sant 13 64 IPR001005 -
Spst3g03543 362 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Spst3g03543 362 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst3g03543 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03543 Spst-Chr3 85388323 85389752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03543 1 197 MYB Transcription Factor Family AT5G57620 75.243 1.10e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g03543 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03543 K09422 - gmx:778083 634.024