Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03529 ATGAATTTCCATCCCAATACTTCTCTTCACCTAAGCCAACCAGATGATGAGATCAATCATCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCATCATCTTCTCCTTCACCTATAAGTCCCATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAGAATGCTCACAAGCTTGAGCGAACACTGGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAACCTTACGGAGGAGCGGAGCAAAGATCAAACTTCAGTGCGTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATAACCAAGGACAAAGTTATGTGAGGCTTGGCGGACGAAAAGAATTCAGCTATGGTCCCAAGGAAGGGGTGGCTTCCTGGTCAAGGGGTTATACTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 492 0.4675 MNFHPNTSLHLSQPDDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQPYGGAEQRSNFSASHHLGRALGVNVVDNQGQSYVRLGGRKEFSYGPKEGVASWSRGYTSEHVQEDIGQLDLSLRL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03529 163 FunFam Zinc finger protein 2 27 93 - -
Spst3g03529 163 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Spst3g03529 163 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Spst3g03529 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Spst3g03529 163 Gene3D Classic Zinc Finger 39 104 - -
Spst3g03529 163 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 100 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03529 Spst-Chr3 85269612 85270103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03529 1 163 C2H2 Transcription Factor Family AT5G57520 47.727 5.13e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g03529 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03529 - - vra:106768043 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03529 3 85269612 85270103 Spst3g03529 3 85269612 85270103 ECH