Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03528 ATGGCACCTTCTCCACAAGAATTCATCTTCCGATCCCCACTCCCCGATATTCCCATTCCCACGCACCTTCCACTACACTCTTACTGCTTCCAAAATCTCTCCCAATTCCAACACCGACCATGCCTCATCGACAGCGAAACCGGCGACATCCTAACCTACGCGGAAGTCGACCTCGCCGCACGCCGCATCGCCGCCGGCCTCCACAAGATCGGCATCCGCCAGGGTGACGTCATCATGCTCGTCCTCCGAAACTGCCCCCAGTTCGCACTAGCCTTCATCGGCGCCTCCCACCGCGGGGCCGTCGTCACCACCGCCAACCCCTTCTACACGACGGCGGAGCTCACCAAGCAAGCTGTCGCCACCAAAACGAGGCTCGTTATAACGCAATCCGCGTTCGTCGACAAAATCAAGAGCTTGGCGGACGACAACGAGGTGATGATCATGTGCATTGATAATTTTTCCTCGGAGAACGTTAACGACGGCGTTTTGCATTTCTCCGCGCTAACTAACGCGGACGAAACGGAAGCCCCCGCCGTTAAGATTAATCCAGACGACGTTGTGGCGCTACCGTTTTCTTCCGGCACTTCGGGGTTCCCCAAGGGCGTTATGCTATCCCATAAAAACTTGGTGACCACTGTAGCGCAGGTAGTTGACGGCGAAAACGCGCACCAATACGCTGCCAGCGAGGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATCTATGCGCTGAATTCAATTTTACTCTGCGGGATTCGATCCGGTGCGGCCATTCTCATTGTGCAGAAGTTCGAGATGACGACGGTGTTGGAGCTGATCGAGAAGTACAAGGTGACTGTTGCATCGTTTGTGCCACCCATCGTTTTGGCCTTGGTTAAGAGCGGAGATGCCCATCGATACGACCTCTCGTCTATTCGCGCTGTGGTCACTGGCGCCGCACCGTTGGGAAAGGAACTGCAAGAAGCCATCAAAGCTAGGCTACCTCATGCTGCTTTTGGACAGGGGTATGGGATGACGGAAGCAGGTCCACTTGCAATTAGCATGGCGTTTGCAAAAGAACCCTCGGAGACAAAACCTGGTGCATGCGGAACCGTTGTCAGAAACGCTGAGATGAAAATCGTGGACACAGACACCGGACTTTCCCTCCCAAGAAACAAAACCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTAAACGACCCAGAGGCTACAGAGAGAACTATAGACAAAGATGGATGGCTACACACTGGAGATATTGGTTACATCGATGATGATGATGAACTCTTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGGGTTCCAAGTAGCTCCTGCTGAGCTCGAAGCACTGTTAATTGCCCATCCAAACATCTCTGATGCTGCCGTTGTACCCATGAAAGATGAAGCTGCCGGGGAAATTCCTGTTGCATTTGTCGTAAGATCAAATGGTTCCGAGATCACTGAAGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAGAGAATAGGTAGGGTTTTCTTCGTAGACTCAATTCCTAAAGCAGCCTCAGGCAAAATTCTGCGCAAGGAATTAACTGCAAGACTTAATGAAGGTCTGGTGGTGACCAATTAG 1641 0.5082 MAPSPQEFIFRSPLPDIPIPTHLPLHSYCFQNLSQFQHRPCLIDSETGDILTYAEVDLAARRIAAGLHKIGIRQGDVIMLVLRNCPQFALAFIGASHRGAVVTTANPFYTTAELTKQAVATKTRLVITQSAFVDKIKSLADDNEVMIMCIDNFSSENVNDGVLHFSALTNADETEAPAVKINPDDVVALPFSSGTSGFPKGVMLSHKNLVTTVAQVVDGENAHQYAASEDVLLCVLPMFHIYALNSILLCGIRSGAAILIVQKFEMTTVLELIEKYKVTVASFVPPIVLALVKSGDAHRYDLSSIRAVVTGAAPLGKELQEAIKARLPHAAFGQGYGMTEAGPLAISMAFAKEPSETKPGACGTVVRNAEMKIVDTDTGLSLPRNKTGEICIRGTKVMKGYLNDPEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISDAAVVPMKDEAAGEIPVAFVVRSNGSEITEDEIKQYISQQVVFYKRIGRVFFVDSIPKAASGKILRKELTARLNEGLVVTN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03528 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Spst3g03528 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 535 - -
Spst3g03528 546 CDD 4CL 19 534 - -
Spst3g03528 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 439 - -
Spst3g03528 546 SUPERFAMILY Acetyl-CoA synthetase-like 14 540 - -
Spst3g03528 546 Pfam AMP-binding enzyme 32 444 IPR000873 -
Spst3g03528 546 Gene3D - 7 439 IPR042099 -
Spst3g03528 546 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Spst3g03528 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Spst3g03528 546 Gene3D - 440 542 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03528 Spst-Chr3 85231462 85236396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03528 7 506 Monolignol Biosynthesis Gene Families AT1G51680 65.743 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03528 K01904 - gmx:548034 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03528 3 85231462 85236396 Spst3g03528 3 85231462 85236396 ECH