Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03504 ATGGAAGGATCACTAGTGAACTCCAGAGAATATACCAAGTGTGAGTTAAGTCCTATGCAGTACATGGAAGGATTACTATTCGACGGCAACGCAGCCTTCTCCGGCGGCGGATTTATGCCTTCTCAGACCACTCAAGGCACTGACCCTTCATCGGTTTCATCCAAGAATCGCGATGCTCAGTCCTTGCTTCCTCTAACAGTGAAGCAAATATACGATGCGTTTCAGTCAAGCGATGATAAAGTCACTTTGACTGTTGACGGTGTGGACGTTAATACTGTTACTCTTATAGGAAGGGTGTGCAACAAAGCTGGACGAATTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGGAAGATTGAGTGTCAAAAATGGTTTCAGGAAGCTGCTGATATAAATGAAGCAGAGCCTATCTTGGACGGAATGTATGTGAGGCTCCATGGACACTTGAAAAATTTTCAGGGTAAAAAGACCTTTAATATTTTCTCTTTCAGGCCTGTGACTGACTTTAATGAGGTTGCTAGTCATTTCATCGATTGCATACATGTGCATCTCTACAATTCCAGGGTTCGGAGTAGTGTCCCCAGTCAGCAACATGTTATGAATTCCACGCCAATTACTCACAAAATGGGTTATCAATCTCAAGTTGTTCCACCAACTAATCAGTTCTCTGATCACCATATCAATGGTCAGAAGAGTGTTGAGAATATGGTCTTAGATTTTCTGCATCTTCCCACCAACAGGTCTAGGAATGAAGGAGTCCATCGTGATCTTATTGCACAGCATCTTGAAATTTCTTTGGATAAGCTCATGGTGGCTCTTAAAAATCTTATCGATGAAGGTGCCGTTTATGAAACTATAGCTGATCACTATAAGTCAATCATCAACGTGGAAGTAGCAGATTACGAAGGCGCCAGCATCACGTGTGGTTCACTCCACCACAACTTCCACCGCCCTCTTGGTCTTGTTCCTGAAATGGCACGTGGAAACAGAGCTCTTCCTTCTCAAGTCACGTGCGGAGGTGGTGACACTTTCTTTTTGGTGGCGATTCAGACAAGTGTCCGCATCGTCCGGGGTCAAAGTGTCCTTTCGGGAGCCAGCCACCATCGGAGAGGAATTATTGTTTACACGATTGAAGAATATCTTTGGGTGGAGAAGGAGAAGCCTCTCACAAATGGTTCAAGGCTCACCCCGTTATGGGTGATGGGTCACCGTGTCCCCCTCCTCTTCCCTCTTGCTTCCCTACAATCATACAATGAACATCACTAA 1269 0.4468 MEGSLVNSREYTKCELSPMQYMEGLLFDGNAAFSGGGFMPSQTTQGTDPSSVSSKNRDAQSLLPLTVKQIYDAFQSSDDKVTLTVDGVDVNTVTLIGRVCNKAGRITDVTFVLDDGTGKIECQKWFQEAADINEAEPILDGMYVRLHGHLKNFQGKKTFNIFSFRPVTDFNEVASHFIDCIHVHLYNSRVRSSVPSQQHVMNSTPITHKMGYQSQVVPPTNQFSDHHINGQKSVENMVLDFLHLPTNRSRNEGVHRDLIAQHLEISLDKLMVALKNLIDEGAVYETIADHYKSIINVEVADYEGASITCGSLHHNFHRPLGLVPEMARGNRALPSQVTCGGGDTFFLVAIQTSVRIVRGQSVLSGASHHRRGIIVYTIEEYLWVEKEKPLTNGSRLTPLWVMGHRVPLLFPLASLQSYNEHH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03504 422 Coils Coil 260 280 - -
Spst3g03504 422 Gene3D - 54 189 IPR012340 -
Spst3g03504 422 Gene3D - 225 295 IPR036388 -
Spst3g03504 422 FunFam Replication protein A 32 kDa subunit 226 295 - -
Spst3g03504 422 CDD RPA2_DBD_D 92 185 - -
Spst3g03504 422 SUPERFAMILY Nucleic acid-binding proteins 62 188 IPR012340 -
Spst3g03504 422 PANTHER REPLICATION PROTEIN A-RELATED 27 294 IPR040260 -
Spst3g03504 422 Pfam Replication protein A C terminal 184 289 IPR014892 -
Spst3g03504 422 MobiDBLite consensus disorder prediction 38 58 - -
Spst3g03504 422 FunFam replication protein A 32 kDa subunit A-like 55 189 - -
Spst3g03504 422 SUPERFAMILY "Winged helix" DNA-binding domain 229 294 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03504 Spst-Chr3 84943493 84957530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03504 27 294 Core DNA Replication Machinery Family AT2G24490 43.173 1.71e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03504 K10739 - gmx:100782819 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03504 3 84943493 84957530 Spst3g03504 3 84943493 84957530 ECH