Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03502 ATGGCTACGGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTGGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGCACGAAACTGCAACAGACCCTGAATCACATTCTTCTCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACTTACCTGTTCCTACGACCAGCATTCCAGGCAATAATGGTAATGATTCTGTTAATACTACATACTGCAAAAACTCAGCTTGTAAAGCTACCCTGAATCAAGCAGATGCATTTTGTAAAAGATGTTCATGCTGCATTTGTCGTCTATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGTCACCTTGAGTGTGCTTTAAAACATAATGGTTCTGGAATTGGCAAAGATGGGGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGAGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTCTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTAAACAGGCTTTCTTCGGGGCCTGAGGTTCAGAAACAATGTGGTTTTGCTCTTGAATCACTTGATTCACTGCTTTTGAAGAGGATCTTGCCGTCATCACCTAATCCAACAACTCAAGATACACGTTTGCTGGCTCTAAATATGATGAGGTTTGAAGACGTCACTGCCACATCCCTCACTATTATTTTGGGTTCAGAAGAACCCTCTGGTGAAAATATCGCTGCTTACACCTTGTGGTATCGCAAAGCTGATGATGTGGACTATCCCATGGACCCGACTTGCAGCTCCCTCCTACTAAATAGAAGGTTCAGTGTCAGGGATCTACTTCCAGGTACAGAATACAGTTTCAAAGTTGTTGCAAATGATTCGAAGGAGTCAGGTGTATGTGAAGCTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTCCCTAATTGCTCTGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGACCTGACTGATAACCGAGCAGATCATTATCCTTCTTATCACAAGGAAAGCGACCAGCTTGTTTCTGGAAATTTATCTAACGATGCTATTAACTGTTCCAACATAGATGTTGTGGGTATTCCTCCTGATGCAGACTCTTTGTCAGACAAGCAGCATGCGGTAGGAATGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTCGAAGACAAGCATTCGCCAGAGGAACAAGTCACTGAGGACATGAGCACTGATGATGGGTTGAATTCCCCAGTTTTAACGGGTAGGGAATGTGTGCCGTTAGTAGGTACCTCGGAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGTCCAGGAAGGATTGGAAGATCCAAGTCCAGTGGCAAAGATCAAGAAAATGGATCCGGGAAAAGGGAGGGCCCCCAGGATGGCAGCACATCCAAGAAGAGAACTGGAGAAAGGCAAGAAGAGGGCCGTGCCGCAAATGGCTTTTCGGAGCGGGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACATGGTACAGCTTAAGAGCCACCCTTCAAGAAGTAAGAATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTTGACACCTTCTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2214 0.4359 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHETATDPESHSSPASGQKPAKRQRKSENPSHLPVPTTSIPGNNGNDSVNTTYCKNSACKATLNQADAFCKRCSCCICRLYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHNGSGIGKDGERPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLLKRILPSSPNPTTQDTRLLALNMMRFEDVTATSLTIILGSEEPSGENIAAYTLWYRKADDVDYPMDPTCSSLLLNRRFSVRDLLPGTEYSFKVVANDSKESGVCEAQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKESDQLVSGNLSNDAINCSNIDVVGIPPDADSLSDKQHAVGMTASIPSSDVLKLEDKHSPEEQVTEDMSTDDGLNSPVLTGRECVPLVGTSEGGLPNTPCKLETLKDGPGRIGRSKSSGKDQENGSGKREGPQDGSTSKKRTGERQEEGRAANGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATLQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03502 737 MobiDBLite consensus disorder prediction 546 645 - -
Spst3g03502 737 CDD FN3 351 428 IPR003961 GO:0005515
Spst3g03502 737 MobiDBLite consensus disorder prediction 93 107 - -
Spst3g03502 737 MobiDBLite consensus disorder prediction 85 131 - -
Spst3g03502 737 Gene3D Immunoglobulins 331 431 IPR013783 -
Spst3g03502 737 MobiDBLite consensus disorder prediction 117 131 - -
Spst3g03502 737 SUPERFAMILY Fibronectin type III 351 443 IPR036116 GO:0005515
Spst3g03502 737 MobiDBLite consensus disorder prediction 441 499 - -
Spst3g03502 737 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Spst3g03502 737 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Spst3g03502 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 737 IPR044514 GO:0010048|GO:0040029
Spst3g03502 737 MobiDBLite consensus disorder prediction 441 481 - -
Spst3g03502 737 MobiDBLite consensus disorder prediction 600 645 - -
Spst3g03502 737 CDD PHD_VIN3_plant 161 226 - -
Spst3g03502 737 Pfam Fibronectin type III domain 350 423 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03502 Spst-Chr3 84914011 84918250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03502 4 605 PHD Gene Family AT4G30200 47.319 8.98e-161 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03502 - - gmx:100794721 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03502 3 84914011 84918250 Spst3g03502 3 84914011 84918250 ECH