Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03494 ATGGCTACTGACAAAGCAGCAATCACCCTCGAACAAATAAAAAACGAGACCGTCGATCTGGAACGTATTCCTATTGAGGAAGTGTTCCAGCAATTGAAATGTTCCAGAGAAGGATTGTCCTCGGACGAAGGAGCCAATCGGCTTCAAATATTTGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAATTACTCAAGTTTCTTGGGTTCATGTGGAACCCTCTGTCATGGGTGATGGAAGCTGCAGCTATTATGGCAATTGCTCTTGCAAATGGCGGTGGGAGACCCCCAGATTGGCAAGATTTTGTGGGTATTGTGTGCTTGTTGCTGATCAACTCCACCATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCAGCTGCCGCTCTTATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAAATGGACTGAGCAAGAAGCTGCTATTCTAGTTCCTGGAGACATCATAAGTATCAAACTAGGTGATATAATTCCTGCTGATGCTCGTCTTCTCGAGGGTGATCCTTTGAAAGTTGATCAGTCCGCCTTGACTGGAGAGTCGCTTCCTGCTACCAAGAGTCCTGGAGATGAAGTTTTTTCTGGCTCAACTTGTAAGCAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACCTTTTTTGGGAAAGCAGCTCACCTGGTGGATAGTACTAACCAAGTTGGACATTTCCAGAAAGTGCTTACGGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCGATTCAGCACCGAAAGTACAGAGATGGAATTGATAACCTTCTGGTCCTCTTGATTGGAGGCATTCCCATTGCTATGCCCACTGTGCTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTTTCTCAGCAGGGGGCTATCACCAAGAGAATGACTGCCATTGAAGAAATGGCCGGTATGGATGTCCTTTGCAGTGACAAGACAGGTACACTCACACTTAACAAGTTGAGTGTTGACAAGAGCTTGATTGAGGTCTTTGCAAAGGGTGTTGACAAGGATCACGTGATTCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGGGCCGGGGTAAGAGAAGTACATTTCTTACCATTTAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCCGATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCTGAGCAGATCATGACCCTGTGTAACCTCAAGGAAGATGCAAAGAAGAAGGTTCATGGTATTATTGACAAATTTGCAGAGAGAGGGCTTCGTTCACTTGCAGTTGCTAGACAGGAAGTTCCTGAGAAATCAAAAGAAAGCGCTGGCAGTCCATGGCAGTTTGTTGGTGTGTTGTCACTGTTCGACCCTCCCAGACATGACAGTGCTGAAACTATCCGTAGAGCTCTCCATCTTGGTGTTAATGTCAAGATGATTACTGGGGATCAACTTGCCATAGCTAAGGAGACTGGCCGAAGACTCGGGATGGGAACCAATATGTACCCATCTGCTTCTTTGCTTGGTCAAGACAAAGATGCAAGTATTGCTGCACTTCCAGTAGAAGAGCTGATTGAGAAGGCAGATGGTTTTGCTGGAGTATTTCCAGAGCACAAGTATGAAATTGTCAAGAAGTTGCAAGATAGGAAGCACATCTGTGGAATGACTGGAGATGGTGTCAATGACGCTCCTGCTTTGAAGAAGGCCGATATTGGAATTGCTGTTGCTGATGCAACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACAGAACCTGGTTTGAGTGTTATTGTTAGTGCAGTCTTAACTAGCAGGGCTATTTTCCAGAGAATGAAAAACTACACGATATATGCAGTGTCCATCACTATCCGTATAGTGTTTGGCTTCATGTTCATAGCATTGATCTGGAAGTTCGACTTCTCTCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATCATGACAATTTCAAAGGACAGAGTGAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGCAAGAAATATTTGCTACTGGGGTTGTACTTGGAAGTTACTTGGCACTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACCGATTTCTTCCCTGAAAAGTTTGGAGTTAGGCACCTGACTCATGATGAAATGATGTCTGCTTTGTATTTACAAGTCAGTATAGTCAGCCAGGCCCTGATATTTGTTACGCGTTCTCGAAGCTGGTCGTTTGTTGAACGCCCTGGAATGCTGTTAGTTATCGCTTTCATTATTGCTCAGTTGATTGCTACAGTCATAGCAGTGTATGCTGACTGGAGCTTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATTTTCCACTTGACCTGATGAAGTTTGCCACCCGTTACATATTGAGTGGCAAGGCTTGGCTAAACCTGCTACAAAACAAGACTGCCTTCACCACCAAGAAAGACTACGGTAAGGAGGAGAGGGAAGCTCAGTGGGCTCATGCTCAGAGGACCCTACACGGACTTCAACCACCAGAAACTTCTGGCATTTTCAATGAGAAGAACAGTTATAGAGAACTCTCAGAGATTGCTGAGCAGGCCATGAGAAGAGCTGAAGTAGCACGGCTTCGCGAGCTTCACACACTGAAAGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGTTTGGACATTGATAACATCCAGCAGCACTACACGTTGGAGACCCTGGAGGAGCAAAGGGAAAGAGTACCAGTTAAAGAGGTGGAGTCATGTGACGGCATTTATAGTGGGGTTTTGGTGTCTTTGTTTTCTAGTGCACATGGGAGAGAGTCCGTTCTGTGGGCAGTTGTGGAAAGCAAGAAGCATGTGAGTCCATGTGCCATTCTAAATAAACAACAAAAGGGTCTTTCAGTTCCGATTTCACCACCCACCCCCACTTCTCTTTCTCTTGGTTGCAGCATTGTTGTCCTAGATAAAATGGAAGGGCAAGTAGCTAAACGCAGACGTGTATACTCTGTGGAACCAAGACAAATAGTGCAATCTATATTTACTAGGAATTATTTGAACCATTTAGTTCCAGCGTTGGTGAAGATAAAGGAAAAGAACTCTATGGAAGATAGCAGCCATTGTGATATTAACAATGCTGTCAAGTATGAGGTGGACATGGCAATGGTGTTGTCAGCACAAGGTTTTGCATGGAGTAACGGCCTTAAAGTCAAGCTTCAAAGCGATCATGTTCATTTCAATGCGGCTAAAAGCACTAGGTTTCTTGGAAATGAGGCTGGCGGAGGTTCATCAAAGGCTTGTGACAAAAATGAAGTTGTCCCAATGGAATTCTCTTCAAACCCTAGCTCGAAGTCTCAGGTTGAGGTTCCAGGGAGCAAGTCTAAGTGCAAGGACATGTCAGAAATGAAAAGTGATTTGGTCAGAGAAGATGATAATGAAGATGAGGACATCAACAAGCAGTGGAAGAGGCTGAGAAGGTTGATACCTGGAGGAGAAGAGATGTGTGACGAACAAATGGCTTCAGAGCTTGAGAGTTACATAAGCTGTTTGCAAATGCAGGTGAACGCTCTTCAGTTTCTGCTGCCACAGGCCCGTTAA 3744 0.4482 MATDKAAITLEQIKNETVDLERIPIEEVFQQLKCSREGLSSDEGANRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPATKSPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLIEVFAKGVDKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMTLCNLKEDAKKKVHGIIDKFAERGLRSLAVARQEVPEKSKESAGSPWQFVGVLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGVVLGSYLALMTVIFFWAMKETDFFPEKFGVRHLTHDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGMLLVIAFIIAQLIATVIAVYADWSFAKVKGIGWGWAGVIWLYSVVFYFPLDLMKFATRYILSGKAWLNLLQNKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPETSGIFNEKNSYRELSEIAEQAMRRAEVARLRELHTLKGHVESVVKLKGLDIDNIQQHYTLETLEEQRERVPVKEVESCDGIYSGVLVSLFSSAHGRESVLWAVVESKKHVSPCAILNKQQKGLSVPISPPTPTSLSLGCSIVVLDKMEGQVAKRRRVYSVEPRQIVQSIFTRNYLNHLVPALVKIKEKNSMEDSSHCDINNAVKYEVDMAMVLSAQGFAWSNGLKVKLQSDHVHFNAAKSTRFLGNEAGGGSSKACDKNEVVPMEFSSNPSSKSQVEVPGSKSKCKDMSEMKSDLVREDDNEDEDINKQWKRLRRLIPGGEEMCDEQMASELESYISCLQMQVNALQFLLPQAR 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03494 1247 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 849 IPR023298 -
Spst3g03494 1247 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Spst3g03494 1247 Gene3D - 330 629 IPR023214 -
Spst3g03494 1247 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Spst3g03494 1247 SUPERFAMILY HAD-like 329 639 IPR036412 -
Spst3g03494 1247 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 PRINTS H+-transporting ATPase (proton pump) signature 762 783 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Spst3g03494 1247 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Spst3g03494 1247 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Spst3g03494 1247 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Spst3g03494 1247 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Spst3g03494 1247 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Spst3g03494 1247 MobiDBLite consensus disorder prediction 1176 1197 - -
Spst3g03494 1247 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Spst3g03494 1247 Gene3D - 98 817 - -
Spst3g03494 1247 CDD bHLH_AtIBH1_like 1188 1243 IPR044549 GO:0006355
Spst3g03494 1247 Gene3D - 902 953 - -
Spst3g03494 1247 FunFam Plasma membrane ATPase 136 220 - -
Spst3g03494 1247 NCBIfam HAD-IC family P-type ATPase 567 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 NCBIfam HAD-IC family P-type ATPase 105 361 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03494 1247 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Spst3g03494 1247 Pfam E1-E2 ATPase 135 312 - -
Spst3g03494 1247 Gene3D - 345 492 IPR023299 GO:0000166
Spst3g03494 1247 FunFam ATPase 4 plasma membrane-type 578 817 - -
Spst3g03494 1247 SFLD Haloacid Dehalogenase 315 644 - -
Spst3g03494 1247 FunFam Plasma membrane ATPase 345 492 - -
Spst3g03494 1247 FunFam Plasma membrane ATPase 484 640 - -
Spst3g03494 1247 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 808 IPR006534 GO:0008553|GO:0016020|GO:0120029
Spst3g03494 1247 MobiDBLite consensus disorder prediction 1158 1197 - -
Spst3g03494 1247 SFLD p-type atpase 315 644 IPR044492 -
Spst3g03494 1247 Coils Coil 904 924 - -
Spst3g03494 1247 PANTHER CALCIUM-TRANSPORTING ATPASE 21 885 - -
Spst3g03494 1247 CDD P-type_ATPase_H 38 843 IPR006534 GO:0008553|GO:0016020|GO:0120029
Spst3g03494 1247 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Spst3g03494 1247 Gene3D - 136 220 - -
Spst3g03494 1247 MobiDBLite consensus disorder prediction 1158 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03494 Spst-Chr3 84799787 84811522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03494 10 953 Primary Pumps ATPases AT5G57350 86.152 0.0 1649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03494 K01535 - gmx:100816905 1770.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03494 3 84799787 84811522 Spst9g02957 9 63708480 63716200 PCT