Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03488 ATGTCAGTAACCTTGGAAGCCTCTTACTTGGTGAAGCCTATGGAGCCAACACAGAGAGGACGTGTACCCTTATCTGAATGGGATCAAACAGGAACCATAAATCACGTTTCCATAATATACTTTTATGGTCCCTCCAAACACTTTGATCTCTCCCCAAACTATACCAATATTGCTTCCACCTTGAAGGACTCATTAAGCCGAGTCCTGGTACCGTTTTATCCTCTAGCTGGTCGTTTGCACTGGATAAAAAATGGTCGTTTAGAGCTTGATTGCAATGCCATGGGTGCTCAGTTCGTTGAAGCTCAGTCCTCGTTAAGATTGGAAGATCTAGGTGACTCTTCATCCTCTTCGGGGTACCACTCCCTTGTTCCAAGTGTAGACTACACTCTCCCATTTCACGAGTTGCCCTTGGTTCTGGTTCAGTTAACCAAGTTCAAGTGTGGTGGCATTAGCATTAGCATAGCAATTTCTCATGCACTTGCTGATGGAACAAGTGCATTGCACTTCACTTCTGAATGGGCGAGGCTTTCACGCGGCGAGCCTCTGCAAACGGTACCGTTTATTGACAAGAAAGTGTTCCGAGCTGGGGAGCCTCCTTTGGCACCGCTAACAAAGTGTCGTGTTTACTCGGAGTTCGATGACCTTCCGTTGTTGCTGGACCAAACAAAGAGGACAGAGGAAAGGAAGAAGAAAACCAAAGTGGCTATTCTCAAACTAAGCAAAGTCCAAGTTGAGACGCTGAGAAAGACAGCAAATGAGAGTCATAGACCTAGGAACGGTCGTGGTTACACTCGTTACGAGAGTGTAACTGGCCACGTTTGGAGAAGTGCATGCAAGGCAAGAGGGCACAAAGAGGACCAACCAACTGCGCTTTGTGTTTGTGTTGACTCGAGGGATCGCCTGGAACCTCCTTTGCCAAAAGAGTATTTTGGAAATACCGTCATCGATGTGGTTGCTTCAAGTCTGGTGGGTGATTTGGTGTCAAAGCCGTTGGGGTATGCGTCGAGTAGAATAAGAGAGGCGATTGAGAGGGTGAATGATGAGTACGTGAGATCGGGGATTGAGTTCTTGAAGAATCAAGAGGATTTGAGTAGGTTTCAGGATCTTCATGGGATAGGGAGTGAGATCAAGGAGCCTTTATATGGGGATCCTAATCTTAGTGTTGTTAGTTGGTTGACGTTGCCGATCTATGGGATTGATTTTGGGTGGGGGAAGGAGCTTCATATGAATCCAGGGCCATATGATTTTGATGGAGATTGTGTGCTTCTTCCTGGTCCTGATGGGGATGGATCTTTGTTGCTTGCTTTATGTCTACAGGAAGTGCATATGGATGCGTTTAACAAGCATTTTTATGAGGACATTGAGTAA 1368 0.4605 MSVTLEASYLVKPMEPTQRGRVPLSEWDQTGTINHVSIIYFYGPSKHFDLSPNYTNIASTLKDSLSRVLVPFYPLAGRLHWIKNGRLELDCNAMGAQFVEAQSSLRLEDLGDSSSSSGYHSLVPSVDYTLPFHELPLVLVQLTKFKCGGISISIAISHALADGTSALHFTSEWARLSRGEPLQTVPFIDKKVFRAGEPPLAPLTKCRVYSEFDDLPLLLDQTKRTEERKKKTKVAILKLSKVQVETLRKTANESHRPRNGRGYTRYESVTGHVWRSACKARGHKEDQPTALCVCVDSRDRLEPPLPKEYFGNTVIDVVASSLVGDLVSKPLGYASSRIREAIERVNDEYVRSGIEFLKNQEDLSRFQDLHGIGSEIKEPLYGDPNLSVVSWLTLPIYGIDFGWGKELHMNPGPYDFDGDCVLLPGPDGDGSLLLALCLQEVHMDAFNKHFYEDIE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03488 455 Gene3D - 220 453 IPR023213 -
Spst3g03488 455 Gene3D - 1 209 IPR023213 -
Spst3g03488 455 Pfam Transferase family 1 452 - -
Spst3g03488 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 448 - -
Spst3g03488 455 FunFam Tryptamine hydroxycinnamoyl transferase 220 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03488 Spst-Chr3 84698401 84699768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03488 1 452 Monolignol Biosynthesis Gene Families AT5G48930 38.022 3.13e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03488 K13065 - gmx:100777007 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03488 3 84698401 84699768 Spst3g03488 3 84698401 84699768 ECH