Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03461 ATGCGGGATAGTGTGAAGAAGTTAAACAACAAAGGATCTAAAAAATTTGGTCATTTGAAGGTACGTACGAAGGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTTACACAAATAATGTTGACGTATCAAAGAAGAGGGTTATCTGTTCCCTCAAGATCAAAGGGCCACGTAAGGATTCTGCAGATAAGAAATTGATTACTGGACAAAAATTGCCTTCGAAGAACAAAAAATCTTCACAGAAGCCATCCTCAAAGTTGCAAGTCAAAAAGGCTTCTCTTAACTCTAGAAAAGAGGGGGGAAATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAAAGAAGAAAAGACAGAGGAATAACGTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGCAGTGTGGCTCATCATTATTCTGTTTTTTGCATTGATGGGAACTCCTTCTGCAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTGGTTCAGTGAGTAGCATTGAAGATTCTGCCATTCCTCCACATGGATCTGGTTTCTATGAACATATAATATGTGCCAAGTGCAAGATGCGTGAAGAGGCTCCAGATAATGATGTTATAAGATGTGATGGCACATGCAAGCGTGCTTTTCACCAAAAATGTTTAGACCCTCCTTTAGACACTGAAAATGCTCCTCTTGGAGACTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAAGCAATGAATGCTCATCTTGGAACTCACTTCTCCTTGCATAGTGCTTGGCAGGATGTGTTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTAATGAATCCTGAAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCAGAATATCAACATGGAAGGAACAAATGATAGTTCATCTGATGATTTTAGTAGTTCTACCAGTCTGTGTTATTCTGGTGGTGAATATTCTCCAGTGGATGGTGTCAGTCATGAATATTTTTTTGTCAATAGTAGCATAGATTCTGATGAGTATGAGGACAAAGCCTGTGGGCGTAGGCACCGAAAAGCTGTGGACTACAAGCAACTTTATGATGAAATGTTTGGAAAGGATGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGACGAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACTTTGCACGAAAGTGAGAATAGGCACCCCAATAATGAGCACATGACTAGAAAAGATTCTTCAAGCGTAAATGTCAAAAGGCATTGTTTTAGGATTCCGCGTGATGCTGTTCAGAAGCTTCGCCAAGTTTTTGCTGAGAATGAACTTCCTCCAAGATCTATTAGAGAGGCTCTCTCAAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAATAGAAAGCATCAAGCAGAAGGAGCAGCAACTCAGCTTAAGGGTATCATTTCTACAAAGAACTCCACATTACAAAATCAAGAGAATAGTGATCCTTTGAAATCAAAGAGCTTGAAAATTACTACAACTCATTCCCAGAAGGATGTCACTGGAAGAAAGAAGATGAAGTTATCCAGCAAGAAAAGACAACCAGAGATTCCTCCACCTCCAGGAGAAAATGGAAACAAGGACTTCATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAGAAAAAAGAAGTTGGTAAATTTTACATTTGAAGGAGATTATCAGACGGCAGAGTTGGAATTTGAAAGACTATGCAAATTGAAGCAAAAACTAGATAGTATGAAGGAAAAATTAACTACAATTCAAAGGTTCAGAGTAAAGGATTCAGATGAATCCCATGCTAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAGGTTGAATGA 2133 0.3962 MRDSVKKLNNKGSKKFGHLKVRTKGKKDKVKVESKSYTNNVDVSKKRVICSLKIKGPRKDSADKKLITGQKLPSKNKKSSQKPSSKLQVKKASLNSRKEGGNADGEVKLQKMKRKRKKKRQRNNVDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSSVAHHYSVFCIDGNSFCSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSVSSIEDSAIPPHGSGFYEHIICAKCKMREEAPDNDVIRCDGTCKRAFHQKCLDPPLDTENAPLGDWFCKFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETALMNPEEEWPSDDSEDDDYDPERKEDSQNINMEGTNDSSSDDFSSSTSLCYSGGEYSPVDGVSHEYFFVNSSIDSDEYEDKACGRRHRKAVDYKQLYDEMFGKDAPAYEQLSEDEDWGPGRRKRREKECDAVDSLMTLHESENRHPNNEHMTRKDSSSVNVKRHCFRIPRDAVQKLRQVFAENELPPRSIREALSKELGLDTEKVSKWFKNARYLALKNRKHQAEGAATQLKGIISTKNSTLQNQENSDPLKSKSLKITTTHSQKDVTGRKKMKLSSKKRQPEIPPPPGENGNKDFMEMSDDVSLKKLLKKRKKKLVNFTFEGDYQTAELEFERLCKLKQKLDSMKEKLTTIQRFRVKDSDESHANEPSIVYVPTAVLREKVE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03461 710 ProSitePatterns Zinc finger PHD-type signature. 239 288 IPR019786 -
Spst3g03461 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 285 IPR013083 -
Spst3g03461 710 SMART PHD_3 238 289 IPR001965 -
Spst3g03461 710 Pfam Homeodomain 497 541 IPR001356 GO:0003677
Spst3g03461 710 ProSiteProfiles Zinc finger PHD-type profile. 236 291 IPR019787 -
Spst3g03461 710 SMART HOX_1 488 550 IPR001356 GO:0003677
Spst3g03461 710 Pfam PHD-finger 238 291 IPR019787 -
Spst3g03461 710 MobiDBLite consensus disorder prediction 329 373 - -
Spst3g03461 710 FunFam pathogenesis-related homeodomain protein 488 552 - -
Spst3g03461 710 Gene3D - 488 554 - -
Spst3g03461 710 MobiDBLite consensus disorder prediction 358 373 - -
Spst3g03461 710 MobiDBLite consensus disorder prediction 11 25 - -
Spst3g03461 710 CDD homeodomain 489 550 IPR001356 GO:0003677
Spst3g03461 710 ProSiteProfiles 'Homeobox' domain profile. 486 546 IPR001356 GO:0003677
Spst3g03461 710 SUPERFAMILY Homeodomain-like 489 551 IPR009057 -
Spst3g03461 710 MobiDBLite consensus disorder prediction 1 38 - -
Spst3g03461 710 MobiDBLite consensus disorder prediction 566 624 - -
Spst3g03461 710 MobiDBLite consensus disorder prediction 333 349 - -
Spst3g03461 710 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 9 708 - -
Spst3g03461 710 MobiDBLite consensus disorder prediction 566 590 - -
Spst3g03461 710 SUPERFAMILY FYVE/PHD zinc finger 232 294 IPR011011 -
Spst3g03461 710 MobiDBLite consensus disorder prediction 55 130 - -
Spst3g03461 710 MobiDBLite consensus disorder prediction 72 91 - -
Spst3g03461 710 CDD PHD_PRHA_like 239 288 IPR045876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03461 Spst-Chr3 84391367 84395785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03461 123 551 Homeobox Transcription Factor Family AT4G29940 53.515 2.34e-141 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Spst3g03461 Homeodomain 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03461 - - gmx:100817639 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03461 3 84391367 84395785 Spst3g03461 3 84391367 84395785 ECH
Spst3g03461 3 84391367 84395785 Spst9g02919 9 63310905 63316493 PCT