Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03458 ATGTCTTCGTGTCTGACCGGAGCTGGTGGAAGAACCTATGGTTTCGATTTCGAATTTGTTAAATCTCCGTCTTCCTCCACTAGAACCTCTCATACCTCTTCTTCACCTTCTTCGACAATCTCCGAATCGAGCAATTCACCGCTCGCAATCTCCACGAAGAAACCCAGAACACCGCGAAAGCGACCGAACCAAACCTACAATGAAGCCGCGGCGCTTCTCTCCACGGCGTACCCCAACCTCTTCTCCACCAAGAACCTCAAAACGCAGGGCAAATTCGCAAAGCCCGCATCGGAGAATTTTGATTATGACTCTTCGGAGCTGTTGTTGCCGTTCAGGGTTTTGGACGGGTCGTCCTCGTGTTTCCTTCTGGACCAACCGGACCCGAAACCCGTGGAGAGGCCTAAAGTGGTGAGCGTGCAGGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCCGTGGTGAATTTCAATTTCCTCGAATTGAACGACGATTGCGAAGAGAGCCTCGATGCGGAATCGATTCTCGACGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGGGTCCAAGAGGTCTCAAACGACGCCGTTAATGACTTCCCCTGGATAATGCCTTTTGGCGGGAAATCGGACTTCCCCAGACCCCGTGTCCGCGCTCTACGACACGTCGACGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCTCCAAATATCGCCAAAAATTAACACCAAGCCTCCCCCGGTGACCGCCGAGAAGAAGATGAAGAAGAAGAAGGTGGCAGGGATTGCAGCGGCGGAGAAACCGGTCGTGGTGGAGTTAAAGAACGCGGAATTGCCCAAACCGAAACAAGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAGCGCTTGGTCCGACCGCGGTACGCCGTTCTCCGACGATAGCCCCCTAGCCGACTTGCCGGAAAATGACGTCACCGCGCGGCTGTCGCAAATTGATTTGTGGTGGGACAATGGCGGAGTCAGAGAAGCTAGCGTGCAGCGCTACAAAGAGAAGCGGCGAACGCGCCTCTTCTCCAAGAAAATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGCAGGGGCGATTTGTTAGGAGGCTCAATCCTAGCTCAAATGCACACAGATGA 1176 0.5357 MSSCLTGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKFAKPASENFDYDSSELLLPFRVLDGSSSCFLLDQPDPKPVERPKVVSVQEKACGSPGEISSVVNFNFLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQEVSNDAVNDFPWIMPFGGKSDFPRPRVRALRHVDDGNWWNFPAVDILQISPKINTKPPPVTAEKKMKKKKVAGIAAAEKPVVVELKNAELPKPKQGLMLKLNYDDVRSAWSDRGTPFSDDSPLADLPENDVTARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMQGRFVRRLNPSSNAHR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03458 391 Pfam CCT motif 340 381 IPR010402 GO:0005515
Spst3g03458 391 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515
Spst3g03458 391 MobiDBLite consensus disorder prediction 22 52 - -
Spst3g03458 391 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 384 - -
Spst3g03458 391 MobiDBLite consensus disorder prediction 22 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03458 Spst-Chr3 84373784 84376168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03458 257 382 C2C2-CO-like Transcription Factor Family AT1G25440 41.447 5.23e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g03458 CCT 2.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03458 - - gmx:100810303 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03458 3 84373784 84376168 Spst3g03458 3 84373784 84376168 ECH
Spst3g03458 3 84373784 84376168 Spst9g02918 9 63307649 63308593 PCT