Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03453 ATGGAGAATATTGAGGAGGACAAGCATTTCTGGGAGAACATTCTCTTCCCAAACCAAGAGCTTAATAGCTGGCCAGTGGATGAGGCAGCCTTGTCAGGGTACTATGATTCAAGCTCTCCGGACGGCGGTGCTTCATCGGCGGCATCGAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAATGAAAGACTTTTTGCGCTTAGAGCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGCACTTGCATGAGCAAGAGAAGAGACTCCAAGCAGAGATTTTGGATCTTGAATCTGGGAAGCTCAAAAACCCAACCTATGAATTGGAGCACGACTTGCCTATTCTCCTCAGGTCCAAGAAGAGGAGAGAACAGCTATTCGATTCTGCCACTTTAAAAAATTCCCCCATTGAATTAATTGAGCTGAGGGTTGCATACATGGGAGAGAAGACGTTTGTGGTGAGTTTGACGTGCAGCAAAAGGACAGACACCATGGTAAAACTGTGTGAGGTTTTCGAATCTTTAAAGCTCAAGATCATTACTGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAAACACTTTTCATCCAGGCAGATGAAACAGAGAAAGACGTTTTGCAGATAAAAATTCAGACAGCAATTTCAGCTCTCAATGTTCCTCAAAGCCCAATGAGTATCTGA 720 0.4347 MENIEEDKHFWENILFPNQELNSWPVDEAALSGYYDSSSPDGGASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRLQAEILDLESGKLKNPTYELEHDLPILLRSKKRREQLFDSATLKNSPIELIELRVAYMGEKTFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLLKTLFIQADETEKDVLQIKIQTAISALNVPQSPMSI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03453 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Spst3g03453 239 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Spst3g03453 239 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 224 - -
Spst3g03453 239 SMART finulus 52 101 IPR011598 GO:0046983
Spst3g03453 239 Gene3D - 44 112 IPR036638 GO:0046983
Spst3g03453 239 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 115 - -
Spst3g03453 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 110 IPR036638 GO:0046983
Spst3g03453 239 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03453 Spst-Chr3 84344100 84347986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03453 1 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 57.674 2.17e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g03453 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03453 - - gmx:100803916 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03453 3 84344100 84347986 Spst3g03453 3 84344100 84347986 ECH
Spst3g03453 3 84344100 84347986 Spst9g02915 9 63259769 63265255 PCT