Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03445 ATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGGCCGATATAGAGGCTGGGTCTCCCGCTGGCTGCTCTGCTGATTTTGATGATGGAGAATTTTCTGCTGATCCATTTGATGTTACCAGAACAAAAAATGCTCCGGTTCAACGCCTCAGGCGCTGGAGGAGCAGGCGCCAGGGAAGTACTGGATTGAGACAAGCGGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGAAGAAGCGATTATTAAGAATTATTATAATGCATACACGGGTCATTCAAGCTGCATATCTATTCAAGAAAGCTGCGCAAATGAATGGACTAGGAACTATAAAACCTGATTCAAGCTCCAGTGGAGAATTTTTAATTGGACTAGAACAACTTTGTTCAATTTCAAGAGACCGTGATACTACGGCTCTGCGAGAAAATGGAGGGGTTGTAGGGTTATCAAATTTGTTGAAAACCAATTTAGAGAAGGGGATTCGACGTGATGATGCTGACTTGGTAAAACGGAGGACTGCATTTGGCTCCAACAACTATCCTCGAAAGAGTGGAAGAAGTTTATTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCCGAGGGTATCAAGGAAGGATGGTATGATGGGGGAAGTATTTCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAACAGTCTCTTCAGTTTCGAGATCTAAATGAGCACAAGAGAAACATACATTTAGAGAAGGTTATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATCGGTAACCAGGTCCCTGCTGATGGAGTTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCGAAAAAAATTCTAAAGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGTTGGTAACAGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTCTCGCTACCTTAATTGGTATTATTGGACTCTCTGTGGCTATTATTGTTCTGATAGTGCTACTGGCCAGGTATTTCTCAGGGCATACTAGAAACTCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACAAAAGTTGGTAATGCTATTGATGGAGTGATTAAAGTATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTCACCTTAACACTTGCCTACTCAATGAAGAAAATGATGGCAGATAAAGCCTTGGTAAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTACTCCTCCTGACGATGCAGGACAGTTCCCTCCTTTGCTATGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTCCCTGAGGGTGGTAATGATGTTGAGATTTCTGGATCACCAACCGAAAAGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCGTTTTGATGCTCTCAGATCAGAATCATCAATTATTCATGTCTTCCCATTTAATTCAGACAAAAAACGAGGAGGAGTTGCAATAATGCTGCCTGACTCTAAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTAGTTGTACACGGTATATTGATCTTAATGATCAGTGGGTGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAATGTTATTGAAGATATGGCTGCTGATAGTCTACGCTGTGTTGCAATTGCATATACATCATATGAAATGGAGAATGTTCCAACTAGCGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTGTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGATTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTTCTATGGAATGTGGAATTCTTGGTTCAAGCTCTGATGCTACAGAGCCAATCATAATTGAAGGAAAAAGATTTCGTGCCTTGACAGATAAAGGGAGAGAAGAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCCCCTAATGACAAGCTTTTGCTTGTGCAAGCGTTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGAACGGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACTGTCAATATAGCAGCACTTGCTATAAATCTTGTTGCTGCATTTTCCACTGGTGAAATCCCATTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCTTGATGGATCAAGATCCAATGGGCCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATGTATCAAGTTTCTGTCTTGCTTATACTTAATTTCCAAGGTGTTAAGTTACTGGGTTTGAGGGATGAGCCCAACCGCCCTGCAACCAGAGTGAAGAATTCTCTTATATTCAATGCGTTTGTTTTTTGTCAAGTGTTTAATGAATTTAATGCCCGAAATCCAGTTGAAATCAACATATTCAAGGGAGTCTCAAGAAACTACCTCTTTTTGGGGATAGTGGGAATAACTGTTGTGCTCCAGATTGTCATCATTGAATTTCTTGGGAAGTTCGCTAAAACAGTCAAGCTTGATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAATGGATACCAGTACCTGAGGCTCAACTCAGTACATTTATCCGAGCATGTCTTCGAATCTGA 3252 0.4167 MSFSKGSPGSQTPADIEAGSPAGCSADFDDGEFSADPFDVTRTKNAPVQRLRRWRSRRQGSTGLRQAALVLNASRRFRYTLDLKKEEEKKRLLRIIIMHTRVIQAAYLFKKAAQMNGLGTIKPDSSSSGEFLIGLEQLCSISRDRDTTALRENGGVVGLSNLLKTNLEKGIRRDDADLVKRRTAFGSNNYPRKSGRSLLMFMWDACKDLTLIILMVAAMASLALGIKSEGIKEGWYDGGSISFAVILVILVTAISDYKQSLQFRDLNEHKRNIHLEKVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSKDPFLISGCKVADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIIGLSVAIIVLIVLLARYFSGHTRNSDGSVQFIAGKTKVGNAIDGVIKVFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKITPPDDAGQFPPLLCSLLIEGVAQNTNGSVYVPEGGNDVEISGSPTEKAILEWGIKLGMRFDALRSESSIIHVFPFNSDKKRGGVAIMLPDSKIHIHWKGAAEIVLASCTRYIDLNDQWVEMDEEKMSYFKNVIEDMAADSLRCVAIAYTSYEMENVPTSEELAHWSLPEDDLVLLAIIGLKDPCRPGVKDAVQLCQKAGIKVKMVTGDNVKTAKAISMECGILGSSSDATEPIIIEGKRFRALTDKGREEIVDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINLVAAFSTGEIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQDPMGRREPLVSNIMWRNLLIQAMYQVSVLLILNFQGVKLLGLRDEPNRPATRVKNSLIFNAFVFCQVFNEFNARNPVEINIFKGVSRNYLFLGIVGITVVLQIVIIEFLGKFAKTVKLDWKLWLISVIIAFISWPLAVVGKWIPVPEAQLSTFIRACLRI 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03445 1083 Gene3D - 494 849 IPR023214 -
Spst3g03445 1083 SMART Cation_ATPase_N_a_2 155 226 IPR004014 -
Spst3g03445 1083 SFLD Haloacid Dehalogenase 479 856 - -
Spst3g03445 1083 Gene3D - 507 704 IPR023299 GO:0000166
Spst3g03445 1083 Pfam haloacid dehalogenase-like hydrolase 494 818 - -
Spst3g03445 1083 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 701 IPR023299 GO:0000166
Spst3g03445 1083 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 1067 IPR023298 -
Spst3g03445 1083 Pfam Cation transporter/ATPase, N-terminus 154 220 IPR004014 -
Spst3g03445 1083 PANTHER CATION TRANSPORTING ATPASE 125 1068 - -
Spst3g03445 1083 FunFam Calcium-transporting ATPase 698 849 - -
Spst3g03445 1083 Pfam E1-E2 ATPase 277 475 - -
Spst3g03445 1083 FunFam Calcium-transporting ATPase 251 373 - -
Spst3g03445 1083 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Spst3g03445 1083 PRINTS P-type cation-transporting ATPase superfamily signature 697 708 - -
Spst3g03445 1083 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Spst3g03445 1083 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Spst3g03445 1083 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Spst3g03445 1083 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Spst3g03445 1083 CDD P-type_ATPase_Ca_PMCA-like 180 937 - -
Spst3g03445 1083 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 88 IPR024750 GO:0005516
Spst3g03445 1083 Gene3D - 47 111 - -
Spst3g03445 1083 MobiDBLite consensus disorder prediction 1 27 - -
Spst3g03445 1083 Gene3D - 177 373 - -
Spst3g03445 1083 FunFam Calcium-transporting ATPase 9 plasma membrane-type 351 521 - -
Spst3g03445 1083 FunFam Calcium-transporting ATPase 204 261 - -
Spst3g03445 1083 Pfam Cation transporting ATPase, C-terminus 889 1066 IPR006068 -
Spst3g03445 1083 NCBIfam calcium-translocating P-type ATPase, PMCA-type 149 1068 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Spst3g03445 1083 SUPERFAMILY HAD-like 495 909 IPR036412 -
Spst3g03445 1083 Gene3D - 204 1061 - -
Spst3g03445 1083 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Spst3g03445 1083 SUPERFAMILY Calcium ATPase, transduction domain A 277 370 IPR008250 -
Spst3g03445 1083 SFLD p-type atpase 479 856 IPR044492 -
Spst3g03445 1083 NCBIfam HAD-IC family P-type ATPase 771 884 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03445 1083 NCBIfam HAD-IC family P-type ATPase 241 413 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03445 1083 NCBIfam HAD-IC family P-type ATPase 436 523 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03445 1083 PRINTS H+-transporting ATPase (proton pump) signature 804 820 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03445 1083 PRINTS H+-transporting ATPase (proton pump) signature 836 861 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03445 1083 PRINTS H+-transporting ATPase (proton pump) signature 650 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g03445 1083 FunFam Calcium-transporting ATPase 821 1070 - -
Spst3g03445 1083 FunFam Calcium-transporting ATPase 507 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03445 Spst-Chr3 84192284 84215503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03445 20 1078 Primary Pumps ATPases AT4G29900 69.822 0.0 1513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03445 K01537 - gmx:100790157 1808.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03445 3 84192284 84215503 Spst3g03445 3 84192284 84215503 ECH
Spst3g03445 3 84192284 84215503 Spst9g02904 9 63104586 63126487 PCT