Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03442 ATGCATAACCCTGATTTTGCTGTAGCCACCATGGATAGGTTTAAGGAGGAGAAGAAGAAGAAAAACACAGGGCGAAAGAAGATTGAGATAAAGAAGATTGAGAAAAACACCAACAAGCAAGTGACATTCTCGAAAAGAAGAGTAGGGCTGTTCAAGAAAGCGAGTGAACTGTGCATTCTGTGCAACGTTAACATGGCCATTATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGGCATCCAGACGTGGAGGGCATTGTTGATAGCTACCTGAAGGGAGCCAAAGTGTTGGAAGCATCATCAGAGCCAAGAGGGTCATATGAAGAAAGCAACATGCAATATGAGGAGGCAATGAAGAATTTGGCGTTGGAAAAGAAGAATCTGACAGAAACTGAAACACTGGCTAAGGAGGGGTTGAACAGAAGGTGGTGGGAGGACCCCATTGATGAGATGAATGAACGTGAGTTGGAACAGTTCACGGTGCCACTCTATGAGTTGAGGAAAAAACTAGCCGAAAGGGCTGGTCAATTGTTCATGCTTTCAATTCAATGA 555 0.4378 MHNPDFAVATMDRFKEEKKKKNTGRKKIEIKKIEKNTNKQVTFSKRRVGLFKKASELCILCNVNMAIIVFSPADKLFCFGHPDVEGIVDSYLKGAKVLEASSEPRGSYEESNMQYEEAMKNLALEKKNLTETETLAKEGLNRRWWEDPIDEMNERELEQFTVPLYELRKKLAERAGQLFMLSIQ 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03442 184 Coils Coil 108 135 - -
Spst3g03442 184 FunFam Agamous-like MADS-box protein AGL62 35 101 - -
Spst3g03442 184 PANTHER MADS BOX PROTEIN 25 172 - -
Spst3g03442 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Spst3g03442 184 Gene3D - 36 105 IPR036879 GO:0003677|GO:0046983
Spst3g03442 184 SUPERFAMILY SRF-like 24 94 IPR036879 GO:0003677|GO:0046983
Spst3g03442 184 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Spst3g03442 184 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Spst3g03442 184 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Spst3g03442 184 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Spst3g03442 184 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03442 Spst-Chr3 84182391 84182945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03442 22 172 Type I MADS-box Gene Family AT2G24840 45.570 1.85e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g03442 SRF-TF 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03442 - - vra:106766532 238.039