Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03436 ATGGCGTTAGATCTCGCAGGTCTTGCCAAGATGAGGATGGAAGAACAAATAGCCATAGAAGAAGCAGCTTCCGCTGGATTGAAGAGTATGGAGCATCTCATTCGTGTCCTTTCTTCTCAGATCCCTTCTTCTTCTTCTGCTTCTTCGTCTTCTTCAACACACCACCACCGTCTTAATCTCAATCACCTTGACTGCACGGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCACCTTCTCATCCTTCTTCCTCCGTTTCTCTTCCTTCTCCTCCCCCTTCTCTTCCTTCTCCACCACAACCTCAGCCTCAAAAACTTACTCTAGATTTTGCCAACCCTAAGGTTAAGTCAAATCCCAATCCTAACCCCTCTTCCACAGATTTGTCGGTTTCTCAATATTCCAAGACCAAAGAAACCACCTTTACCATATCCCCTCCTATGTCGACCACTACCTCCTCCTTCATGTCCTCCATCACCGCCGATGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCATCGCCGCCGGGAAGCCCCCTCTCTCCGCATCACACAGAAAGAGGTGTCACGACGCCACCCTCTCAGCCGGCAAAGCCTCATCCTCGGTCCACTGCCATTGCTCCAAGAGAAGGAAATCTCGTCTGAGACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATTGCCGATATCCCAGCGGACGAGTACTCGTGGAGAAAGTACGGTCAAAAACCCATCAAAGGATCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCAGCGAGGAAGCACGTGGAGCGAGCCCAAGATGACCCCAACATGCTAATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAACCGCGTCTGCCGGAAACCTCCGAGGGCGCTGCCATGGCTTTCAGCGCTCAGGCTGTTTAA 984 0.5264 MALDLAGLAKMRMEEQIAIEEAASAGLKSMEHLIRVLSSQIPSSSSASSSSSTHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSSSVSLPSPPPSLPSPPQPQPQKLTLDFANPKVKSNPNPNPSSTDLSVSQYSKTKETTFTISPPMSTTTSSFMSSITADGSVSDGKIGPAIIAAGKPPLSASHRKRCHDATLSAGKASSSVHCHCSKRRKSRLRRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETSEGAAMAFSAQAV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03436 327 Gene3D WRKY domain 236 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g03436 327 SUPERFAMILY WRKY DNA-binding domain 246 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g03436 327 Pfam Plant zinc cluster domain 202 246 IPR018872 -
Spst3g03436 327 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 313 IPR044810 GO:0003700
Spst3g03436 327 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g03436 327 MobiDBLite consensus disorder prediction 90 164 - -
Spst3g03436 327 MobiDBLite consensus disorder prediction 101 119 - -
Spst3g03436 327 FunFam WRKY transcription factor 65 232 309 - -
Spst3g03436 327 MobiDBLite consensus disorder prediction 120 164 - -
Spst3g03436 327 Pfam WRKY DNA -binding domain 250 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g03436 327 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03436 Spst-Chr3 84124964 84126199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03436 1 313 WRKY Transcription Factor Family AT2G24570 50.296 4.31e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g03436 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03436 - - var:108322692 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03436 3 84124964 84126199 Spst3g03436 3 84124964 84126199 ECH
Spst3g04053 3 91470612 91471937 Spst3g03436 3 84124964 84126199 PCT
Spst3g03436 3 84124964 84126199 Spst9g02896 9 63043994 63045212 PCT