Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03426 ATGGAAGACGACGAAGCATGCATCACTGGGCTATGTTTGGGACTAGGAATGGGAGGGCATGTTCCACAGAAGGGTAAGCAGAAAGAGAACAAGCCTGTGGCGTGCCTAGACTTGGCGTTTGAGCTTTGTCCAAAAGGGGAAACCATTAACCTGAATCATGATAAGGTAGAAAGCACTGATTCTGATAACAGCAACAACAACAACAGATGCAGAAAGAAACTGAGACTTTCCAAGGAACAATCATCCATGCTTGAGAACAGCTTCAAACTGCATAGCACTCTTAACCCGGTCCAGAAACAAGCACTAGCTGATCAATTGAATTTAAAGACAAGACAAGTTGAAGTTTGGTTCCAGAATAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGACCGTGAGTTGTTGAAGAAACACTGTCAAAATCTAAGTGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAGCTACGTGCACTTAAGGTTGGACCATCGCCTCTATGCATTCAACTAACCAAAACGGCGACTCTGACTACGTGTTCTTCGTGCGAGAAACTAGTAAAACTGAATGAAGGAAATAAGAAAATAGAGTTAGAGGGTAGAAATTGA 609 0.4269 MEDDEACITGLCLGLGMGGHVPQKGKQKENKPVACLDLAFELCPKGETINLNHDKVESTDSDNSNNNNRCRKKLRLSKEQSSMLENSFKLHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDRELLKKHCQNLSDENKRLKKELQELRALKVGPSPLCIQLTKTATLTTCSSCEKLVKLNEGNKKIELEGRN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03426 202 Coils Coil 126 160 - -
Spst3g03426 202 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Spst3g03426 202 Pfam Homeodomain 71 125 IPR001356 GO:0003677
Spst3g03426 202 Gene3D - 75 125 - -
Spst3g03426 202 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Spst3g03426 202 CDD homeodomain 71 128 IPR001356 GO:0003677
Spst3g03426 202 SUPERFAMILY Homeodomain-like 55 128 IPR009057 -
Spst3g03426 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 54 188 - -
Spst3g03426 202 SMART HOX_1 69 131 IPR001356 GO:0003677
Spst3g03426 202 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03426 Spst-Chr3 84056706 84057913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03426 58 185 Homeobox Transcription Factor Family AT3G60390 65.891 7.45e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst3g03426 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03426 K09338 - gmx:100812222 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03426 3 84056706 84057913 Spst9g02887 9 63001356 63002489 PCT