Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst3g03423 | ATGATGAAGTCCTTTCACACACTGACTGCAGAAGAACCTCCTTCATCCTCTGTGGCTTTAGAAGCCTCCGAGTCACGCCCCGGCCCTGGAGTGTTCTTCTTCCTTGGGGGGACTGTATTGCTCACCATATTGCTCATTCTCCTGTTTATATTTTGGAGGCGTGGTAAACAGCCAGCAAAGGTGATGGAGAACACAAATCTAACAAGTCAGCAGCATGGACCGATGAACTTCATTAGTGGGAACCTTCGGACAATTAGTCACTTTGACTTTCGGACATTGAGGAGTGCCACTAAAAATTTCCATCCTCAGAATCTTCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGCAAGTTGGCAGATGGAAGGCTTATTGCAGTAAAGACATTGTCTCTTGACAAGTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGTCTTCTGGGATGCTGCACAGACGGGCCTCAAAGGATACTTGTGTACGAATATATGAAGAACAGAAGAAAGAGTGATGAATTTCTGAATTGGAACACTAGATTCCAAATTATTCTTGGTGTAGCACGGGGATTACAATATCTCCACGAGGATTCGTCGCATTTAAGAATTGTTCATCGAGACATCAAAGCAAGCAACATTCTTCTTGATGAGAAGTTTCAGCCTAGGATTGGAGACTTTGGACTAGCTAGGTTCTTCCCTGAAGACCAAACTTATCTTAGCACTCAGTTTGCAGGAACATTAGGTTATACAGCCCCTGAGTATGCCATTAGGGGAGAACTGTCCGAAAAGGCAGACATCTATAGTTTCGGAGTTCTTGTGCTTGAAATCATCAGTTGCAGGAAAAACACAGACCTTACTTTACCATCAGAAATGCAGTACCTCCCTGAATTTGCATGGAAACTTTATGAGAAGTCAATGTTGATGGATATAGTAGATCCAAAGTTGAGAGAAGATGGCATAGAAGAAAAGGATGCCATGCAAGCATTTCAGGTGGCCTTGTTGTGCCTTCAGCCACACGCGGATTTGAGACCTGCAATGTCAGAGATAGTAGCATTGTTGACATTCAAAGTTGAAATGGTTACCAAGCCAATGAGGCCAACCTTCGTTGAAAGAAGGCGCGTAATGGATGATGAGAACCACTCTTGGGTAGCCATATCCTCGTAG | 1200 | 0.4383 | MMKSFHTLTAEEPPSSSVALEASESRPGPGVFFFLGGTVLLTILLILLFIFWRRGKQPAKVMENTNLTSQQHGPMNFISGNLRTISHFDFRTLRSATKNFHPQNLLGSGGFGPVYQGKLADGRLIAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQRILVYEYMKNRRKSDEFLNWNTRFQIILGVARGLQYLHEDSSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQTYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEFAWKLYEKSMLMDIVDPKLREDGIEEKDAMQAFQVALLCLQPHADLRPAMSEIVALLTFKVEMVTKPMRPTFVERRRVMDDENHSWVAISS | 399 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst3g03423 | 399 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 378 | - | - | |
| Spst3g03423 | 399 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 38 | 389 | - | - | |
| Spst3g03423 | 399 | CDD | STKc_IRAK | 106 | 366 | - | - | |
| Spst3g03423 | 399 | ProSiteProfiles | Protein kinase domain profile. | 100 | 367 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Spst3g03423 | 399 | SUPERFAMILY | Protein kinase-like (PK-like) | 77 | 368 | IPR011009 | - | |
| Spst3g03423 | 399 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase isoform A | 174 | 375 | - | - | |
| Spst3g03423 | 399 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 215 | 227 | IPR008271 | GO:0004672|GO:0006468 | |
| Spst3g03423 | 399 | Pfam | Protein tyrosine and serine/threonine kinase | 103 | 364 | IPR001245 | GO:0004672|GO:0006468 | |
| Spst3g03423 | 399 | SMART | serkin_6 | 100 | 367 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Spst3g03423 | 399 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 64 | 176 | - | - | |
| Spst3g03423 | 399 | Gene3D | Phosphorylase Kinase; domain 1 | 74 | 174 | - | - | |
| Spst3g03423 | 399 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst3g03423 | Spst-Chr3 | 84017548 | 84019994 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst3g03423 | 5 | 381 | Receptor kinase-like Gene Family | AT1G56120 | 41.927 | 1.59e-93 | 297 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Spst3g03423 | PK_Tyr_Ser-Thr | 1.6e-43 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst3g03423 | - | - | gmx:100812302 | 631.713 |